Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02490 ATGGTTATCAACACTGATTCTTCCTCAAACCATCACTCACCCTCGCCCACTAGTGGTGCCGCCACCAATAGCCCTAAGTTCCCGCGAAAAAACCTACCTTCTCCTTGGGCCCAGGTTGTTCGCGGTGCCGACTCCGAACCACTCCACCAATCGCCGCCCTCATCATCACCTTCCTCTTCCTCCTCTTCCCTTGATTCCGATGCTGTTGTCGCCGCCGCCGCCGCCGCCATTGATATATCTGATGCTTCCGATAAGGGGAATAATAATGCTAAGAAAGCGGCTTGGAAGAGACCATCCAATGGTGAGGTTGCTCCTGTAATGGGTGCTGTCTCTTGGCCCCCTTTATCTCAATCCGCCAAGCCTTCCGCTAAATCGACATCTGATTCTTCCTCTGTCAACACTACAAGCGAAGGATCACTCTCCACTCCTCAGGGGCCTGTTACTTCACAATCCCCACAGATACAAGCTACCACTACTAATGTGAAGCCTAGTCCTGCAGTGAACTATGGTATGCCTAATAGACAAAGATCGATGAAGCGAGGAGGTGGCAACAACAGCAATAACATTGTGCCTGGTTCTGTGCAGAACAGCTTCCCCAACCCTCAGCCAAATCTTCCACCGTCGTCTCCACCACCATTTCCTGTCCTTCAGATCCCTCCTGGTTCCTTTGCCAATGGGGTGCCAGGGGTTCCTGTTCCTTCCCCAAGAGATCCTTACCGGAACAATAACTGGGATACTACGCCACCAGTTGGGGGTTTCATGCCCCCTATGAATGAACACCGGAGTCATCGCAGGGGTAATGTTGGGCACCATCCACGTGGAGATGGTCCATATAATAACAATTATGGCAGCAGGCGTGATCAGGATCGTGGAAATTATGCGAATGCTAGAGATGCCCGTGCACACCAACAGAGGATGCCTACAAGGGGACTCATGAGGCTCCCACCACCTAATCCTGCTTCATATATGGGGCCTCAGCCTTTGCAACCCTTTGTAAACCCTGCCGGGTTTCCTGAATTCTATTATTATCCAACGCTACAATTAGAACCCTTTGGGGGAATGCCATTCTTCACCCACGGACCTCCTCCTGCAATGTTCTTCCCAGTTGCAGAAACTCCCCTGACCAATGCGATAATTAACCAAATTGAGTATTACTTTAGTGATGCTAATTTAGTGAAAGATGAGTTTTTGAGGTCCAACATGGATGAACAGGGTTGGGTTCCAGTTACTTTGATTGCAAGCTTCCCTCGAGTTAAAAGTTTGACAAGCAATATTAAGTTGATATTGGACTCATTGAGAACTTCCTCTGTAGTGGAAGTGCAGGGTGACAAATTGAGGAGGCGTAAAGAATGGATGAAGTGGCTGCACTCTGCTCAACGTCGGGCTGATTCTAGTTCAATATCCCCCAGTGGATCAAGTTCCAATAACCTAGTTGCTGATTTTGAGAAGATTACTTTGGACAAAGCAATGACAGATAATGTTAATCCTGATCCTACCACAAATGGGGATGCTACAGAAGAGTCTTCCAGTCAGTCTCAACTCCCAAATAGTGATGCTACTGGGAGCAGCAATTAA 1575 0.4851 MVINTDSSSNHHSPSPTSGAATNSPKFPRKNLPSPWAQVVRGADSEPLHQSPPSSSPSSSSSSLDSDAVVAAAAAAIDISDASDKGNNNAKKAAWKRPSNGEVAPVMGAVSWPPLSQSAKPSAKSTSDSSSVNTTSEGSLSTPQGPVTSQSPQIQATTTNVKPSPAVNYGMPNRQRSMKRGGGNNSNNIVPGSVQNSFPNPQPNLPPSSPPPFPVLQIPPGSFANGVPGVPVPSPRDPYRNNNWDTTPPVGGFMPPMNEHRSHRRGNVGHHPRGDGPYNNNYGSRRDQDRGNYANARDARAHQQRMPTRGLMRLPPPNPASYMGPQPLQPFVNPAGFPEFYYYPTLQLEPFGGMPFFTHGPPPAMFFPVAETPLTNAIINQIEYYFSDANLVKDEFLRSNMDEQGWVPVTLIASFPRVKSLTSNIKLILDSLRTSSVVEVQGDKLRRRKEWMKWLHSAQRRADSSSISPSGSSSNNLVADFEKITLDKAMTDNVNPDPTTNGDATEESSSQSQLPNSDATGSSN* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02490 524 PRINTS Lupus La protein signature 381 398 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops10g02490 524 PRINTS Lupus La protein signature 436 449 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops10g02490 524 MobiDBLite consensus disorder prediction 488 524 - -
Rops10g02490 524 MobiDBLite consensus disorder prediction 178 199 - -
Rops10g02490 524 MobiDBLite consensus disorder prediction 1 214 - -
Rops10g02490 524 MobiDBLite consensus disorder prediction 254 305 - -
Rops10g02490 524 MobiDBLite consensus disorder prediction 1 29 - -
Rops10g02490 524 FunFam la-related protein 1B isoform X2 364 454 - -
Rops10g02490 524 CDD LAM 376 449 - -
Rops10g02490 524 SMART la 372 450 IPR006630 -
Rops10g02490 524 Gene3D - 368 457 IPR036388 -
Rops10g02490 524 ProSiteProfiles La-type HTH domain profile. 368 457 IPR006630 -
Rops10g02490 524 Pfam La domain 378 433 IPR006630 -
Rops10g02490 524 MobiDBLite consensus disorder prediction 200 214 - -
Rops10g02490 524 MobiDBLite consensus disorder prediction 492 524 - -
Rops10g02490 524 SUPERFAMILY "Winged helix" DNA-binding domain 365 456 IPR036390 -
Rops10g02490 524 MobiDBLite consensus disorder prediction 115 166 - -
Rops10g02490 524 MobiDBLite consensus disorder prediction 48 67 - -
Rops10g02490 524 PANTHER LUPUS LA PROTEIN-RELATED 109 463 IPR045180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02490 Rops-Chr10 43488817 43492323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02490 K18757 - gmx:100775279 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02490 10 43488817 43492323 Rops10g02490 10 43488817 43492323 ECH
Rops9g02580 9 48299064 48304417 Rops10g02490 10 43488817 43492323 PCT