Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02475 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAGGAGAAAGATTGTGTGGTTAAAAATGTTGGTGACGCGACAAGGCAGTGGGCTGCTGTTGCAAGTACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTATTCAATTAGATGGACTTTGGTTCATTAATAGATGGTTAAAGGAAGCTCAAAATTTTGGGGTGGACTCAAATGACAGCTTTGTTGAAGAATCAATCGTTGCAATGTTACGAGCAGTTGAAAAGCTAAATCTAGACAGTGAGAAGTCGGTTTCATCAGGAATTCGCATCACCATAGGTAATCTTCTTGACCATCATAGCTCTAGGGTTCAGGATAGAGCTAGAGTATTGTTTGACAGCTGGAAAGAAGGTGGAAATGGTGATGCTGAATCTCATGATATGGAGCTTGATGAACTCAACAATGCAAGTGACAAGATTGTCAGTGAGGAAGGCCAGCCATCTGCTTTGAATGAAGCTGGCAATGATAATGATCGTGCATCAGGAGATGCCAGTGTACTGAGAAGCACAGATAATTTACTACCAGAAAGGAATGCCAGTGTGCTGATACAGAGTTCTGATAATACGCTCCAGTCCTCTGTAAGTATGGAATGTGAAGACATCAAAGAGAGATCACCGAACCATCTTGCTGGTGTTCCATCTTCTGCTCAAGAAGTTGCTCCCATAAATGAAGGATTACCTTCATGCACTGCAGGTGAGACCACTTCAGTTGGAACCTGTAATTTTCCTGTTCCAGATCAAGGCAGTTTTGAAGGACAGCCAGATGTTGCACAGTTAAGTGACTTGGACAAAAAGGAGAAGCAGGAGCTAAATGTTATTAATGGCCCTCCAGAAAAACTAGGAGCACCAGTGATATGTTCAGTGTCCTCTAAGGTGGAGCATGAACCTGTTTCCATGGGTGCTAGTGAAGCAAAAACACTTGAATCTGGGAAAGAACCAGCTTTAGAGCATAATGTTGAAAACAATGAGGATGGTGTTTGTCATAAAATAATGGCTTCTGGTAGTATGAGTACAACTGCATCTGATAGGAGCGGGGTGGATGATATTAGAGCTGTAACTAGCATTACACAACTTTCCAAAGCTGCAGAAAATGATGATAACTGTTGTTCAAATGCATGGCAGGACTCATCAATCAGTGGCAGTGACTTGGGAAAGACTGAGGTGTTAGAAATGTCCATCTCTGGAACAGAATATGTGAGAGCAGTAAAGGAAGGCAAGGGCCATATTTATAATGATGGCAAGGATAAGTCAAATGGTTCTGATTCCAGTAAACATGGAAAAGATTCCAGAGGCCCTAACATAATTGACATGAAAGGTTCTGTCCATGAACTTGACTGTGGCATTGTGGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAGGAAGTTAAGAGAGAAGTCTGCAGTTCTTCTTCAGATAAAATCTCAGAAAGTGGAATCAGGCGACCAGGCAGTCCAGATTCTGTAAGAAAAGAGGATGAGCTTACTCATGTCCCAGCCAAGGAGGTCTCCTCCGGACGAAGTCACTCTGCTGGGGCATGTTCTGAGGAGGAGAATGCAAGTATTTCGGACAATATAGAGGCTGAGCCAGAATGCAGACCTGATGTAGTGTCCTTGCAGATGACTGAAGCAGCTCGAGATTCAGGAGGTAACTGTAACTTGGAGAAACATCTCTGCGCCTTTGATCTCAACGAAGTTTCTGATGATATGGATGTTTCTGTAGACACTCTGTCTACTCCAATACCTGTTGTCACTGCTTCAAGGCTTGGACCAACTCCTGGGTTGCCTGGGGCCCCTTTGCAGTTTGAGGGGACACTTGGACAGAAAGAATCAGCTGCCACCAGTGCCTTTCGACCTTCATCACCTCATAAAAATTGTGATAGTGAGAGGAAGGATTGGCTTGATATTGATTTAAATGTGGCTGAGGGTGAAGAAGGATCGGTAAAACCAACTGCTGAATCTTCAGGCCTTCCTTCTGCACAATCATCAGTGGAACTCAGTCCTCAAAGATCAAGGAGACTTGAATTGGATTTGAACAGTACTGGTGATGATGGTGATGCCCAACCTTCAGATCACAGGATGGAGGGGCAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCATCATCATCATCAATGCAGCCTTCAGTCAGAAACATTGATTTGAATGACAGGCCATTCCTTCAAACTGATTTAGTGGACCAGGGGCCTGGTAAGTCTTCTCAGATTATTGATGCACTTGGGCATTCTAAATCATCAGATGCTCCCGTGATCTCTATTTTGGGTGCCAAGGTAGAAGTTGGTAGAAAAGAACCCGTGCCTCAAACTTTCTCTTTGCCAAATGGCAAGGCTATTGAACCTGCAATAGATCTTACAATGTCAAGAACAGGTGGTGTTTTAGGGATGCCCCCCTCAGTTTCCTACAATCATTCAACTGTTTTTGGGTATAATGGAGTGGCACCACCATCAGTATCAGCACCTGCTTTGTCTTTTTCATCATCCATATATGGATCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCACTTGTCCCTCAAGTCGGTGGATCTTCTACAACAGTCCTTTCTTCTTACTCTCAGCCACCAATCATAATGAGCATGACTGGTACACAACTCGGTTTGAATGGGTTTGGACCTTCAAGACCTAACTTTGACCTAAACTCTGGCTTCATGATTGAGGGTGGGAATAGAGACGCATTGGCAGCAAGACAATATTTCCTTCCTGCTCAGGTCAGGACTATGGAGGAGCACGTAAGAACTATGCCACAGCCCTCAAGTTCCGGGGTTGGTGGGAAAAGAAAGGAACCCGATGGTGGTTGGGAATCCTATCCATTTAGCTACAAACATCAGCAACCTCCATGGAAGTAG 2997 0.4424 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQEKDCVVKNVGDATRQWAAVASTIAATENKDCLDLFIQLDGLWFINRWLKEAQNFGVDSNDSFVEESIVAMLRAVEKLNLDSEKSVSSGIRITIGNLLDHHSSRVQDRARVLFDSWKEGGNGDAESHDMELDELNNASDKIVSEEGQPSALNEAGNDNDRASGDASVLRSTDNLLPERNASVLIQSSDNTLQSSVSMECEDIKERSPNHLAGVPSSAQEVAPINEGLPSCTAGETTSVGTCNFPVPDQGSFEGQPDVAQLSDLDKKEKQELNVINGPPEKLGAPVICSVSSKVEHEPVSMGASEAKTLESGKEPALEHNVENNEDGVCHKIMASGSMSTTASDRSGVDDIRAVTSITQLSKAAENDDNCCSNAWQDSSISGSDLGKTEVLEMSISGTEYVRAVKEGKGHIYNDGKDKSNGSDSSKHGKDSRGPNIIDMKGSVHELDCGIVDALEVARQVAQEVKREVCSSSSDKISESGIRRPGSPDSVRKEDELTHVPAKEVSSGRSHSAGACSEEENASISDNIEAEPECRPDVVSLQMTEAARDSGGNCNLEKHLCAFDLNEVSDDMDVSVDTLSTPIPVVTASRLGPTPGLPGAPLQFEGTLGQKESAATSAFRPSSPHKNCDSERKDWLDIDLNVAEGEEGSVKPTAESSGLPSAQSSVELSPQRSRRLELDLNSTGDDGDAQPSDHRMEGQLFLGRNGYWSPSPASSSSSMQPSVRNIDLNDRPFLQTDLVDQGPGKSSQIIDALGHSKSSDAPVISILGAKVEVGRKEPVPQTFSLPNGKAIEPAIDLTMSRTGGVLGMPPSVSYNHSTVFGYNGVAPPSVSAPALSFSSSIYGSGGTIPYMVDSRGAPLVPQVGGSSTTVLSSYSQPPIIMSMTGTQLGLNGFGPSRPNFDLNSGFMIEGGNRDALAARQYFLPAQVRTMEEHVRTMPQPSSSGVGGKRKEPDGGWESYPFSYKHQQPPWK* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02475 998 ProSiteProfiles TFIIS N-terminal domain profile. 72 152 IPR017923 -
Rops10g02475 998 MobiDBLite consensus disorder prediction 959 998 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 438 466 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 495 558 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 173 194 - -
Rops10g02475 998 Pfam TFIIS helical bundle-like domain 100 146 IPR017923 -
Rops10g02475 998 MobiDBLite consensus disorder prediction 438 462 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 636 651 - -
Rops10g02475 998 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 60 152 IPR035441 -
Rops10g02475 998 MobiDBLite consensus disorder prediction 673 700 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 636 659 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 681 698 - -
Rops10g02475 998 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 998 - -
Rops10g02475 998 MobiDBLite consensus disorder prediction 513 529 - -
Rops10g02475 998 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 18 148 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02475 Rops-Chr10 43246756 43250318 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Rops10g02475 Med26 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02475 - - ccaj:109815659 1391.71