Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02465 ATGTCGACTTCTGGCGACGATCAACACCCTCACTTCTCTCAATTCAAATTCGACCTTTTGCATTATCCATCTCCTCATTCCCATTCTCCCTTTCCCAATCTTCCCTTGAGTCAAAGATATGAAATCAATAATTTCAAGTCTCACACAAGTAATATTGAAGCTGTTCCCACTTTGAGTAAAACAGCTAATCTTCCTCCTCCACTTCAGACAGAGCCTAGCCAAAGAGGGAAGCATCGCGGTAAATCAAAAGTTTCAAGAAATGCAAAATCTGGGACTCAAAGATCAAATGCCGAGTCTCCAAATTTGACTGCAGTTAACAACTGTCGGTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCCAGGATGCTAAGGATGGCACCCTTGATCTAAATAAAACTGCTGAGGTCTTGGAGGTTCAGAAACGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTAATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGCGATGGACTTGGGCCACGAGAACTAGAGGATCAAATTAATAGTCTAAAGGCGGAAGTTGAAAGTCTATATGCGGAGGAATGCAAACTTGAGGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTGGAGGAGAGCGAAAACTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTACCCTTCCATGCTTCCAGAATCAAGAACTTATTGCTATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCTGACGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGACTGTTAGAAGTGCAACTGGACCAATAACTTTGTACCTCTTGAACAAGCACAACTGCAAGTTTGAGGATGATAGTGTCAGGCGGGTGAAGTCAATAGATCCATCATGGAATAGTGTCCACTGCAGAATGGAAGGTGTGGGATTATTAGAAAGCCAAGATGATCACAAAAATCCTTCTGAGAGTTTCAGTTCGCATGGCTCAGAGGCATTTGGAATTCAAGAAATTACTCCTACGGATTTTGATATCGATGATGACTATTGGTTTCAATCAGATCATGGAGCGAGTCTGACAGAATTATGGGCAAATATGCAGTTGGTCCATACAGATGGGCTTCAAGACGATTAA 1170 0.4094 MSTSGDDQHPHFSQFKFDLLHYPSPHSHSPFPNLPLSQRYEINNFKSHTSNIEAVPTLSKTANLPPPLQTEPSQRGKHRGKSKVSRNAKSGTQRSNAESPNLTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGVGLIEKTSKNHIRWKGCDGLGPRELEDQINSLKAEVESLYAEECKLEDCIRKKQELLRNLEESENSQKYLFLTKEDILTLPCFQNQELIAIKAPKASFIEVPDPDEELGFRQRQYKMTVRSATGPITLYLLNKHNCKFEDDSVRRVKSIDPSWNSVHCRMEGVGLLESQDDHKNPSESFSSHGSEAFGIQEITPTDFDIDDDYWFQSDHGASLTELWANMQLVHTDGLQDD* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02465 389 Gene3D - 181 292 - -
Rops10g02465 389 PANTHER TRANSCRIPTION FACTOR E2F 70 378 IPR015633 GO:0000978|GO:0006357
Rops10g02465 389 Pfam E2F/DP family winged-helix DNA-binding domain 111 174 IPR003316 GO:0005667|GO:0006355
Rops10g02465 389 FunFam E2F transcription factor 1 103 176 - -
Rops10g02465 389 Pfam E2F transcription factor CC-MB domain 190 289 IPR032198 GO:0046983
Rops10g02465 389 Gene3D - 104 176 IPR036388 -
Rops10g02465 389 SUPERFAMILY "Winged helix" DNA-binding domain 109 172 IPR036390 -
Rops10g02465 389 MobiDBLite consensus disorder prediction 51 100 - -
Rops10g02465 389 MobiDBLite consensus disorder prediction 86 100 - -
Rops10g02465 389 SUPERFAMILY E2F-DP heterodimerization region 185 291 IPR037241 -
Rops10g02465 389 Coils Coil 180 200 - -
Rops10g02465 389 MobiDBLite consensus disorder prediction 51 70 - -
Rops10g02465 389 Coils Coil 204 224 - -
Rops10g02465 389 CDD E2F_DD 185 292 IPR032198 GO:0046983
Rops10g02465 389 SMART E2F_TDP_2 109 174 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02465 Rops-Chr10 43060659 43065028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02465 77 378 E2F-DP Transcription Factor Family AT1G47870 52.131 1.05e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops10g02465 E2F_CC-MB 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02465 K06620 - gmx:100797301 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02465 10 43060659 43065028 Rops10g02465 10 43060659 43065028 ECH