Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02454 ATGAGTGTAGGGGGAGGAGCTGTTGTTGGAGGTGAGATTCGTGAGACTCTAATGGCAGAGATGAAGTTGCTGAAAGAGATGAAGGAACAGTCTGGGGTACCAAAGACTTTGAATTCCGAGTTATGGCATGCTTGCGCAGGTCCCCTTGTATCCTTGCCTCAGGTTGGCACTCTTGCGTATTACTTCCCTCAGGGACATAGCGAACAGGTGGCTGCTTCCACTAGAAGGACAGCGAACTCGCACATTCCAAACTATCCCAATCTTCCATCTCAGTTGCTGTGCCAAGTCCAAGATGTCACACTTCATGCAGACAAAGAAACAGACGAAATCTATGCTCAAATGAGCCTCCAGCCACTGGATCCTGAAAAAGACGTGTTTCCTATGCCTGAGTTTGGGGTTGGGCTAAAGCCAAGCAAGCATCCCAGTGAATTTTTCTGCAAAACTTTAACTGCTAGTGACACAAGCACACATGGTGGCTTTTCTGTACCACGTAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACAATTCAACCACCAACCCAGGAGCTTGTTGTCCGAGATTTGCATGATAATACATGGACATTTCGACATATATACCGTGGTCAGCCAAAAAGACACCTTCTCACAACTGGATGGAGTTTGTTTGTAGGCTTAAAAAGGCTTAAAGCAGGTGATTCTGTTTTTTTTATCAGGGATGAGAAATCTCAATTGCTAGTTGGTGTCAGGCGTGCTAATCGCCAACAGACATCATTGCCATCATCAGTCCTTTCTGCTGATAGTATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGCCCATTCACTATTTTTTACAATCCCAGAGCATGTCCTTCAGCATTTGTTATTCCACTGGCTAAATATAGAAAAGCTGTATATGAGACCCAGCTCTCAATTGGCTCGAGATTTGGTATGATGTTTGAGACAGAGGAATCCGGTAAGCGCAGATATATGGGTACCATAGTTGGCATCAGTGATTTGGATCCTTTAAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTAGTGATAAGCAGAACAGAGTTAGTTCGTGGGACATTGAGACTCCTGAAAATCTTTTCATCTTTCAGTCTTTGACTTCAAGTCTTAAACAGCCATTGCAATCTGGATTATTGGAAAATGAGTGGAGCACTTTGTTAAGAAGACCTTTTATGCGAGTTCCTGAAAATGGAACTCTGGAGCTGTCAAACACCATGCCGAATCTGTACTCAGAACAAATGAGCAGAATTCTTAAAAATCAACTTGTTAACAATAGTGGAAACTGTTTATGGGTCAGACAACAAGAATCTTCTGCTATGAGAGGTCCCACAGAAGAGGTAAATACCATACTGCCAACACCTTGCGAAAAAGTTCATCTTGCAAGTTCAATGAGCATACCACAAAAAAATCTACACTTTCAATCTGAACCAGACCAATCTAATGCCTTGAACTTGATTTCACCGTTGAAAAGTGATCAACTCCAAAAAATGGATCCTTGGTCTTCTGGAACTGTTACTGATAAGTCAAAATTAGAACCTGAGGTGTCAAGTGACCATATGTTGGACTCCACTTCCTTAGAAGGCTGCAACATTGCAAAGTCCATTACAGACCAGTTGACATTCCTTAATCAAAACCAAAGTCCATTACTGGTTGATATCACTGAGCCTGATTCTGCTATTGTGAATAGCCCACTTCCTCAGCTAGATAGTGAAGAATGGATGATGTATTCTTCTTGCCAAGCTTTGGTTGGGCAAAATAGATCAACTGGACCTTTATCACCTTTGCAAGAACAGTCTGTAGTTCTCTCCCAAGCAACTAATCTCCCTTTACCTTCAGTGAGTCAAGACATGTGGGATCCATATGGAAAGAATTTGAAGTGTTTACCTCAAGCAGACCAACTAGCTTCCATGTCGCAGCAAGGGCTGGATAGCCTCAGTTGTATGTCTAGTTCAAACAATTTGAGGGATCTATCATCAGAGAGCAACAATCAAAGTGAAATTTACAACAGCATCAATCTTGATGGTAGTAACAGTATAAGTGCTACCCTGGCTGATCCTTATACTTCAAGTGCCATTTTGGATGAGTTTTGCACATTGAAGGAAAGGAATCTTCACAACCCATCAGATTGCATGGTGAGCAACTTAAGTACCAGCCAAGATGTCCAATCTCAGATAACATCCACAAGTTTAGCTGAGTCACATGCCTTTTCTCTGCAAGACAACTCAGGTGGTGCATCTTCAAGCCATATTGATTTTGATGAAAACAGCTTTCTGCAGAATAATAATTCATGGCCGCAAGTAGCTGCACAGCCTGCACGTAGGCGTACCTATACAAAGGTGCAAAAGGCAGGCTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAACTGATTCGTGCAATCGAATGCATGTTTGGACTGGAAGGTCTGCTGAACGACACTAGATGTTCAGGATGGAAACTGGTATATGTTGATTATGAGAATGATGTTCTACTTGTGGGGGATGATCCTTGGGAGGAATTCGTTGGTTGTGTACGGTGCATCAGAATTTTATCACCTGCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAATAGTGGTGCATTGCAAGGGATCAATGGTTGCATGTCTGGTGGCTGTACTTGA 2727 0.4301 MSVGGGAVVGGEIRETLMAEMKLLKEMKEQSGVPKTLNSELWHACAGPLVSLPQVGTLAYYFPQGHSEQVAASTRRTANSHIPNYPNLPSQLLCQVQDVTLHADKETDEIYAQMSLQPLDPEKDVFPMPEFGVGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGLKRLKAGDSVFFIRDEKSQLLVGVRRANRQQTSLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSAFVIPLAKYRKAVYETQLSIGSRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCSDKQNRVSSWDIETPENLFIFQSLTSSLKQPLQSGLLENEWSTLLRRPFMRVPENGTLELSNTMPNLYSEQMSRILKNQLVNNSGNCLWVRQQESSAMRGPTEEVNTILPTPCEKVHLASSMSIPQKNLHFQSEPDQSNALNLISPLKSDQLQKMDPWSSGTVTDKSKLEPEVSSDHMLDSTSLEGCNIAKSITDQLTFLNQNQSPLLVDITEPDSAIVNSPLPQLDSEEWMMYSSCQALVGQNRSTGPLSPLQEQSVVLSQATNLPLPSVSQDMWDPYGKNLKCLPQADQLASMSQQGLDSLSCMSSSNNLRDLSSESNNQSEIYNSINLDGSNSISATLADPYTSSAILDEFCTLKERNLHNPSDCMVSNLSTSQDVQSQITSTSLAESHAFSLQDNSGGASSSHIDFDENSFLQNNNSWPQVAAQPARRRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLEGLLNDTRCSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPAEVQQMSEEGMKLLNSGALQGINGCMSGGCT* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02454 908 FunFam Auxin response factor 309 381 - -
Rops10g02454 908 Pfam B3 DNA binding domain 145 246 IPR003340 GO:0003677
Rops10g02454 908 ProSiteProfiles PB1 domain profile. 795 879 IPR000270 GO:0005515
Rops10g02454 908 Pfam AUX/IAA family 787 881 IPR033389 -
Rops10g02454 908 CDD B3_DNA 144 245 IPR003340 GO:0003677
Rops10g02454 908 Gene3D - 143 246 IPR015300 -
Rops10g02454 908 SMART B3_2 145 247 IPR003340 GO:0003677
Rops10g02454 908 FunFam Auxin response factor 143 247 - -
Rops10g02454 908 Gene3D - 791 884 - -
Rops10g02454 908 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops10g02454 908 MobiDBLite consensus disorder prediction 515 539 - -
Rops10g02454 908 Gene3D - 309 380 - -
Rops10g02454 908 SUPERFAMILY CAD & PB1 domains 808 874 - -
Rops10g02454 908 ProSiteProfiles B3 DNA-binding domain profile. 145 247 IPR003340 GO:0003677
Rops10g02454 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 885 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops10g02454 908 MobiDBLite consensus disorder prediction 515 530 - -
Rops10g02454 908 FunFam Auxin response factor 790 884 - -
Rops10g02454 908 SUPERFAMILY DNA-binding pseudobarrel domain 135 274 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02454 Rops-Chr10 42865110 42870526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02454 14 904 B3 DNA Binding Superfamily AT1G19850 56.748 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops10g02454 AUX_IAA 3.8e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02454 K14486 - gmx:100790289 1325.07