Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02441 ATGGCAACAACGGCTATATTTCTCGCCTTCATCGTACTGCCCTACTTCACCACCTTAACCTTAACCTTAACGAATGCCCAGAACAACATGAGTATGTCTGAGATCGAAGCTTTAACAACCTTCAAGCTGAACCTTCATGACCCTCTTGGTTCCTTGGATGGGTGGGACCCTTCAACCCCATCAGCACCCTGTGACTGGCGTGGCATTTTCTGTTTCAACAAACGAGTTCATGAACTTCGTTTACCTCGTCTTCAACTCACTGGTTCACTCTCTCCCTCACTCTCCAACCTTCAACAACTTCGCAAGCTTAGTCTTCACTCCAACAACTTCAACGCTTCCATCCCTTCCTCACTCTCTCACTGTCTCTTCCTCCGTGCCGTTTATCTTCACAACAACAACTTCTCCGGCAAGCTTCCACCGGCGCTTCTCAACCTTACAAACCTTCAGATTCTCAACGTAGCACACAACCTTCTCTTCGGTACTATCTCCGGCCACCTCTCAACCTCCCTCCGGTTCCTCGACCTGTCGTCGAATGCATTCTCCGGCGACATTCCAGGGAACTTTTCTTCCAAATCTCAACTTCAGCTCATTAACTTGTCCTTCAATGGCTTCTCCGGCGGAATACCAGTCACCATTGGAGCATTGCAACATTTGGAGTATCTATGGCTAGATTCCAACCACATTCATGGAACCTTACCTTCTGCTATTGCAAACTGTTCCTCACTGGTGCATTTGAGTGCAGAGGGTAATGCCATCGGAGGGTTAATTCCGGCCACCATTGGAACCATGCCGAAGCTTCAAGTGCTGTCACTTTCGATGAATAAGCTTTCAGGTTCGGTCCCCACTTCAATGTTCTGCACTAATGGGTCTCTGAGAATCGTTAAGCTTGGTTTTAATACACTCACGGGTATTTCCAAGCCGCAAAGTGGGAAATGTGTTAGCTTTTTGGAGTTTTTGGATCTTAATGAGAATCACATTAGTGGGGTTCCATTTCCCTCATTTTTGACCAATGCGACGTCGTTAAGGGGTCTTGATCTTTCTGGAAACTCCTTTTCAGGTGTTTTGCCTCCAGATATTGGGAATCTCTTCAGGTTGGAAGAACTGATAGTGTCTAATAATTCATTATCTGGTGGAGTTCCGAGTAGCATTGTGAATTGTAGGTTGTTGAAGGTTCTTGATCTTCAGGGGAATCGATTCTCTGGTCCCATTCCTTCATTTCTTGGGGAATTGAAGAGCTTGAAGGTGTTATCTCTTGGTGGTAACTTTTTTACTGGTTCAATACCAACTAGTTATGGAACACTTTCTGAGCTAGAGATGTTGAATTTGAGCAACAATAAACTAACTGGGATTTTGCCACGGGAGATCATGCAGTTGGGAAATGTGAGTGCTTTGAATCTTAGCAATAACAGATTTTCGGGTAGTGTTTCATCTCATATTGGGGACTTGAAGGCTTTGCAGGTTCTTAATTTGAGTCAATGTGGGTTTTCAGGAAGGGTTCCTGCTACATTGGGCAATTTGATGAAACTGAGTGTGTTGGATTTGAGCAAGCAAAACCTTTCAGGTGAATTGCCCGTTGAGCTTTTTGGATTACCAAGCCTTCAAGTTGTGGCACTTGAAGAAAACCATTTAAGTGGTGCTGTTCCTGAAGGTTTCAGCAGTATAGTTAGTCTAGGGTATCTTAATCTCACATCAAATGCTTTTGTTGGCAATATTCCAACAACCTATGGATTTCTTAGTTCCTTAATTGTTCTCTCCTTGTCTCACAATAGTATTTCTGGTACAATACCTTCTGAGATTGGTGGTTGTTCTCAACTTGAAGTGCTTCAGCTGCAGTCAAATCGTTTGCAAGGTAACATTCCTGGTGAAATCTCTCACCTTTCCCGTTTAAAGGAGCTTAATTTGGGACACAATAGATTGAAAAGTGATATCCCAGATGAAATATCACAATGTTCAGCATTGACTTCACTCGTTTTGGATGCTAATCACTTGACGGGTAACATGCCAGAGTCCTTGTCAAAATTATCAAATTTGACCACTTTGAGTCTTTCTTCAAATCTATTGACAGGAGAAATTCCTGTTGACATTTCACACATTTCTGGTTTGAAGTATTTGAATCTATCCAATAATAATCTTGAGGGTGAGATTCCACAAATGCTTGGTTCTAGATTCAATGACCCTTCTGTGTTTGCAATGAACCAGAGGTTATGTGGAAAACCTTTGCATAGAGAATGTGCAAATGTGAGAAGGCGAAAGAGGAGAAGGCTAATAATCTTTATAGGTGTGGCTGCTGCTGGGCTGTGCATTTTGGCATTATGTTGTTGTGGCTATGTTTACAGCCTCTTAAGGTGGCGCAAGAAGCTTAGAGAAGGGGTGACAGGAGAGAAGAAAAGGAGCCCCACAAATGGAAGCTCAGGAACTGACAGAGGAAGAGGGAGTGGTGAAAATGGAGGGCCAAAACTAGTAATGTTCAATAACAAGATCACTTATGCAGAGACATTGGAAGCGACAAGAAACTTTGATGAGGAAAATGTGTTGAGTAGGGGAAGATATGGGCTTGTGTTCAAAGCCACATACCAAGATGGCATGGTTCTTTCAATTCGTCGCCTTCCTGATGCGTTCATGAACGAGGGTACTTTTCGAAAAGAAGCAGAATCACTAGGAAAAATGAAGCATCGAAATTTAACAGTTCTACGTGGTTATTATGCAGGACCACCACCAGATGTAAGGCTTCTTGTTTATGATTACATGCCAAATGGGAACTTAGGGACACTTCTTCAAGAGGCATCTCAACAAGATGGTCATGTATTAAATTGGCCAATGCGTCATCTAATAGCACTAGGCATTGCTCGTGGGCTTGCTTTCTTGCACTCAGTGCCAATAGTTCATGGTGATGTGAAGCCACAAAATGTTCTTTTTGATGCAGATTTTGAAGCCCATTTGTCAGAATTTGGGTTAGAAAGGTTAACAATGGCAAACCCAGCAGAAGCATCATCATCTTCCACACCAGTTGGTTCATTGGGGTATGTTTCACCAGAAGCTGCATTAACTGGGCAAGCCACCAAGGAAGCTGATGTATACAGCTTTGGGATTGTGTTGTTGGAGATATTAACAGGGAAAAAACCAGTGATGTTCACACATGATGAAGATATAGTGAAGTGGGTTAAGAGGCAATTACAAAGGGGTCAAATTTCTGAGTTGTTGGAGCCTGGTTTGCTTGAACTTGATCCAGAATCATCAGAATGGGAAGAGTTTTTGTTGGGTATCAAAGTTGCTCTTCTATGCACAGCACCTGATCCTCTTGATCGACCATCTATCACTGACATTGTTTTCATGCTCGAAGGTTGTAGGGTTGGACCCGAGATACCATCCTCAGCTGATCCCACAACACTACCTTCCCCTGCTTGA 3405 0.4311 MATTAIFLAFIVLPYFTTLTLTLTNAQNNMSMSEIEALTTFKLNLHDPLGSLDGWDPSTPSAPCDWRGIFCFNKRVHELRLPRLQLTGSLSPSLSNLQQLRKLSLHSNNFNASIPSSLSHCLFLRAVYLHNNNFSGKLPPALLNLTNLQILNVAHNLLFGTISGHLSTSLRFLDLSSNAFSGDIPGNFSSKSQLQLINLSFNGFSGGIPVTIGALQHLEYLWLDSNHIHGTLPSAIANCSSLVHLSAEGNAIGGLIPATIGTMPKLQVLSLSMNKLSGSVPTSMFCTNGSLRIVKLGFNTLTGISKPQSGKCVSFLEFLDLNENHISGVPFPSFLTNATSLRGLDLSGNSFSGVLPPDIGNLFRLEELIVSNNSLSGGVPSSIVNCRLLKVLDLQGNRFSGPIPSFLGELKSLKVLSLGGNFFTGSIPTSYGTLSELEMLNLSNNKLTGILPREIMQLGNVSALNLSNNRFSGSVSSHIGDLKALQVLNLSQCGFSGRVPATLGNLMKLSVLDLSKQNLSGELPVELFGLPSLQVVALEENHLSGAVPEGFSSIVSLGYLNLTSNAFVGNIPTTYGFLSSLIVLSLSHNSISGTIPSEIGGCSQLEVLQLQSNRLQGNIPGEISHLSRLKELNLGHNRLKSDIPDEISQCSALTSLVLDANHLTGNMPESLSKLSNLTTLSLSSNLLTGEIPVDISHISGLKYLNLSNNNLEGEIPQMLGSRFNDPSVFAMNQRLCGKPLHRECANVRRRKRRRLIIFIGVAAAGLCILALCCCGYVYSLLRWRKKLREGVTGEKKRSPTNGSSGTDRGRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKATYQDGMVLSIRRLPDAFMNEGTFRKEAESLGKMKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTMANPAEASSSSTPVGSLGYVSPEAALTGQATKEADVYSFGIVLLEILTGKKPVMFTHDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSITDIVFMLEGCRVGPEIPSSADPTTLPSPA* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02441 1134 SUPERFAMILY Protein kinase-like (PK-like) 818 1123 IPR011009 -
Rops10g02441 1134 ProSiteProfiles Leucine-rich repeat profile. 436 457 IPR001611 GO:0005515
Rops10g02441 1134 FunFam Putative LRR receptor-like serine/threonine-protein kinase 802 915 - -
Rops10g02441 1134 Gene3D Transferase(Phosphotransferase) domain 1 916 1120 - -
Rops10g02441 1134 PANTHER LEUCINE RICH REPEAT KINASE 2 485 1114 - -
Rops10g02441 1134 SUPERFAMILY L domain-like 312 573 - -
Rops10g02441 1134 SUPERFAMILY L domain-like 510 738 - -
Rops10g02441 1134 Gene3D Ribonuclease Inhibitor 461 747 IPR032675 -
Rops10g02441 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 916 1120 - -
Rops10g02441 1134 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Rops10g02441 1134 Pfam Leucine rich repeat 604 663 IPR001611 GO:0005515
Rops10g02441 1134 PRINTS Leucine-rich repeat signature 316 329 - -
Rops10g02441 1134 PRINTS Leucine-rich repeat signature 434 447 - -
Rops10g02441 1134 MobiDBLite consensus disorder prediction 796 810 - -
Rops10g02441 1134 MobiDBLite consensus disorder prediction 791 819 - -
Rops10g02441 1134 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Rops10g02441 1134 FunFam Piriformospora indica-insensitive protein 2 357 451 - -
Rops10g02441 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672|GO:0006468
Rops10g02441 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 209 304 - -
Rops10g02441 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 190 - -
Rops10g02441 1134 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515
Rops10g02441 1134 ProSiteProfiles Leucine-rich repeat profile. 315 336 IPR001611 GO:0005515
Rops10g02441 1134 SMART LRR_typ_2 674 697 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 145 169 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 313 337 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 578 602 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 362 386 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 626 650 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 530 553 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 263 287 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 215 239 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 434 457 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 698 722 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 97 121 IPR003591 -
Rops10g02441 1134 SMART LRR_typ_2 458 482 IPR003591 -
Rops10g02441 1134 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 464 748 - -
Rops10g02441 1134 Gene3D Ribonuclease Inhibitor 33 144 IPR032675 -
Rops10g02441 1134 Gene3D Ribonuclease Inhibitor 164 460 IPR032675 -
Rops10g02441 1134 ProSiteProfiles Protein kinase domain profile. 839 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02441 1134 Pfam Protein tyrosine and serine/threonine kinase 842 1059 IPR001245 GO:0004672|GO:0006468
Rops10g02441 1134 Gene3D Phosphorylase Kinase; domain 1 816 915 - -
Rops10g02441 1134 Pfam Leucine Rich Repeat 701 718 IPR001611 GO:0005515
Rops10g02441 1134 SMART serkin_6 839 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02441 1134 SUPERFAMILY L domain-like 61 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02441 Rops-Chr10 42696438 42699842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02441 1 1134 Receptor kinase-like Gene Family AT1G75640 64.654 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Rops10g02441 PK_Tyr_Ser-Thr 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02441 - - gmx:100784917 1748.02