Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02412 ATGTATCCCGACCAAACCTTTTCTTCAGGGTCCTATGCAGAGATGTTGTCTGGGAATCCTCTATTACCTCATAACTACAGTGAATCTGTAGGAGGACAAAATGAGGCTAAGTTTATCATAACTATGGGTGACACAGTTACCATGCAGTCTATTGATGGGCATTCCAATGGTGATCCAGCTTGCAACTCCCATGTTGTTCAAAGGACAGAAATGGGAATTGTAGATAGTGAGCAAAATAGACAGTGCCAGGGCTTATCTCTTAGTCTTGGGACACTGGTGCCTTCTACTGCATCTGTCCCTCCGTTTCAATACCAGTATCATGACACTGGTCTCATGTCACTAATGAATTCTTGTTTTCCAAACTTAAAGGGGACTATGTCCATTAAAGATGATGAGGCCAACATACATAAGGAATTGAGAAGTGCTGAATGCATGGCATCTGTATCTTTTGGAGGCTTTCATGACAATACCAAAAAGGAGGGTTTTTACAACTCACACCCCTCAATCGGTCTTAATGAAGTCCACTCTGATCCATGCCTGCAAGGATCACCAGGGTTTTCAAACAGTGTTCTAAACTCTCGATACCTAAAGGCGGCACAGGCGTTACTTGATGAAATAGTTAATGTCCGAAAGGCTTGGAAGCAATCTGGAATTGAAAAACAAGATAACTTCCGTGACATTGGATTAGATGGATCCAAAGATACTAGTGGAAAATCTACCAGTCAATCTATGCAAATATCTTCAGGCCCTAATGGACCTACTACCAATCCTTCTTGTGAACTATCACCCGTGGAACGGCAGAATTTGTTGGACAAGAAGACAAAGCTTTTGTCGATGTTGGATGAGGTAGATAAAAGATACAGACAATATTGCCATCAAATGCAGATTGTGGTGTCATCTTTCGATATGGTTGCTGGGTGTGGAGCAGCAGAACCATATACTACACTTGCCTTGCGAACAATTTCTCGACACTTTCGCTGTTTGCGAGATGCTATCAGCGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGGGAACAAGAGGGAATACCCCGTCTCCGTTATGTTGATCAGCAGCTTAGACAACAAAAGGCACTTCAGCAACTCGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAGCATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCAAGACAAACTGGCTTGACCCGAAACCAGGTGGCTAATTGGTTCATCAATGCACGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGAACTGCAATCTTTCATCAGAAAATACACTCAAAGGTAAAAGAGATGATGTTCAAGAGTCTGATAATAAATGGGAAGAGTCACAGGACAATTTAATAGCTGTTGATAGTGTCCAGCCGGGGCAACTTAATGGGTTGAAGTTGGAACATGCATCCTCTACTACAGAAGTCCATGGAGAAAATGGAATGGAATCTGGAACTAGGAAATTGCAGGCTAACCAAAGGTTTAGTATGAACAATAATAATAGCCTTTATTCAAGTGGTGATGACAGCCAAATGGCATCTACTCCTGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTGGCCATGTCTCACTTGCATTGGAGTTGAGGAATTGTGAAAGTGATGGATTTGCCATATCCGATGATGCCATACATAAAAGACGTAATCAGACAGTGGCCTCTTCCCCAGATACTGATTTACTAGATTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTTAGCAATCCTCATCTGCTGCATGAGTTTGTCGTATGA 1881 0.4258 MYPDQTFSSGSYAEMLSGNPLLPHNYSESVGGQNEAKFIITMGDTVTMQSIDGHSNGDPACNSHVVQRTEMGIVDSEQNRQCQGLSLSLGTLVPSTASVPPFQYQYHDTGLMSLMNSCFPNLKGTMSIKDDEANIHKELRSAECMASVSFGGFHDNTKKEGFYNSHPSIGLNEVHSDPCLQGSPGFSNSVLNSRYLKAAQALLDEIVNVRKAWKQSGIEKQDNFRDIGLDGSKDTSGKSTSQSMQISSGPNGPTTNPSCELSPVERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENTLKGKRDDVQESDNKWEESQDNLIAVDSVQPGQLNGLKLEHASSTTEVHGENGMESGTRKLQANQRFSMNNNNSLYSSGDDSQMASTPATYDLSELGNFTVGGHVSLALELRNCESDGFAISDDAIHKRRNQTVASSPDTDLLDYHFTDSGKQQHRFSNPHLLHEFVV* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02412 626 Gene3D - 372 449 - -
Rops10g02412 626 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 136 466 - -
Rops10g02412 626 MobiDBLite consensus disorder prediction 224 261 - -
Rops10g02412 626 MobiDBLite consensus disorder prediction 233 261 - -
Rops10g02412 626 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Rops10g02412 626 SMART HOX_1 375 439 IPR001356 GO:0003677
Rops10g02412 626 CDD homeodomain 375 436 IPR001356 GO:0003677
Rops10g02412 626 Pfam Associated with HOX 190 333 IPR006563 -
Rops10g02412 626 SUPERFAMILY Homeodomain-like 376 442 IPR009057 -
Rops10g02412 626 SMART prehox3 184 334 IPR006563 -
Rops10g02412 626 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02412 Rops-Chr10 42274781 42279606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02412 38 457 Homeobox Transcription Factor Family AT1G19700 48.636 9.79e-118 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops10g02412 POX 2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02412 - - gmx:100791641 948.732