Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02411 ATGTCCAACTCCATTACCCATCAAAACCAATTTGAGAACCAAGAGCTTGATGCATATAGCTCTTCTTTAAGGAACAATAATGCATTTCCTGATACCCTTGGAGCATTTCCCAGCATTCAATCTATTGGAGACAGAATATCAAGATCAGTGGACCTTCCTGTACTAGCTGAGGGTTCTGAGATCAGCCACACAAGGCATTTGATGGATCTTCTTGGTGCAGCTAATGGGAGCAATCACCAACCTCAAGGCCTTTCCCTTTCTTTAGGCTCTCACATGCTTGTCCCTTCTGATGAATGCAGGCATAGATCCTTAAATTCGGGTCTCATGAACCCCAATTACTTCATGTCTGCACAAGAGGCAAGGGAAGCTTGTAATCCAGCGGTGGAGCAGCATCTAACCAGTGACTATTTCTTCACTGGTGGTACCTTTGCTTCTTCTTCTACCTCATTGAACCGTTCTCCTTCAACTTCTCATGGGGCTGAGTCTTTTGCTGCTGTCATTGGGAACTCAAGATACCTCAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTTGATAGAATCAATGAAAAGTATGCGGAGAAGTTATTTCATGGGGGTAGAGCAGGTGCACGAACAACACTTTCCTCAGAGTTAAAAGCAGAGTTGAGGAATAATGGACCTTTATTAGCTGACAAACATGAACATCAAATGAAAATTGCAAAGTTGATTACTTTGTTGGATGAGGTTGAGAGCAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCCTTTGAAATGATTGCAGGTCTTGGAGCTGCCAAATGTTACACTGCTTTAGCACTCCAAGCCATGTCTAGGCATTTCTGCAGCTTGAGAGATGCCATAGTGTCCCAAATAAATGTGGAGAAAAGAAAACTCTTTCAGGATTTACCTAAAATCAGTAGTGGATTTTCTCAACTAAGCTTATTTGATAGAGATACCAGACAGATTAGAATGTCTCTCCAACAACTTGGGGTGATCCAAAACCAACGCCAAGTATGGAGACCCATCAGAGGGTTACCTGAGACCTCAGTAGCAATCCTTCGTTCTTGGCTCTTTGAACACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCCCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAACGCTCGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTATAAAGAAGAGTTTGGTGACTCTTCAGAAGACTCCAACCCTCCTGCTAACAACTACTTGACTAGCGAGGATACCACAGACTGTGTGGAAGATTGA 1341 0.4243 MSNSITHQNQFENQELDAYSSSLRNNNAFPDTLGAFPSIQSIGDRISRSVDLPVLAEGSEISHTRHLMDLLGAANGSNHQPQGLSLSLGSHMLVPSDECRHRSLNSGLMNPNYFMSAQEAREACNPAVEQHLTSDYFFTGGTFASSSTSLNRSPSTSHGAESFAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFHGGRAGARTTLSSELKAELRNNGPLLADKHEHQMKIAKLITLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIVSQINVEKRKLFQDLPKISSGFSQLSLFDRDTRQIRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPANNYLTSEDTTDCVED* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02411 446 SMART HOX_1 350 414 IPR001356 GO:0003677
Rops10g02411 446 CDD homeodomain 350 411 IPR001356 GO:0003677
Rops10g02411 446 SMART prehox3 161 300 IPR006563 -
Rops10g02411 446 Pfam Associated with HOX 166 299 IPR006563 -
Rops10g02411 446 Gene3D - 345 425 - -
Rops10g02411 446 MobiDBLite consensus disorder prediction 425 439 - -
Rops10g02411 446 ProSiteProfiles 'Homeobox' domain profile. 369 410 IPR001356 GO:0003677
Rops10g02411 446 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 427 - -
Rops10g02411 446 Pfam Homeobox KN domain 367 406 IPR008422 GO:0003677|GO:0006355
Rops10g02411 446 MobiDBLite consensus disorder prediction 419 446 - -
Rops10g02411 446 SUPERFAMILY Homeodomain-like 356 418 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02411 Rops-Chr10 42270028 42272652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02411 77 425 Homeobox Transcription Factor Family AT1G19700 42.480 8.09e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops10g02411 POX 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02411 - - gmx:100792161 697.197