Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02407 ATGGCCTCGTCCAGTGGAAATTCCTCTACATCCACCAAATTTCAGATTCTGATGGATCAAAGGAAGAATAAGAGAAAGCAATCAAATCGTGAATCAGCAAGAAGATCTAGGATGAGAAAGCAGAATCACTTGGAAGATCTGATGAGCCAGGTGTCTCAACTCACAAAGGACAACAGTGAAATCCTCACAAGCATTAACATCACCACACGGCACTATCTGAAAGTTGAGGCAGAAAATTCCATTTTGAGGGCCCAGATGGGAGAACTTAGTCAAAGGCTTCAATCACTGAATGATATCCTCAGTCTCATCAACACAACCACCGGGTCCTATGATGAAAGGGATTGTTATCAAACAAGTGCACAAAATTTCATGAATATGCGCTGTTTTAACCAACCCATTACGGCTTCTGCAGACTTTTTTCAGTGGTGA 429 0.4196 MASSSGNSSTSTKFQILMDQRKNKRKQSNRESARRSRMRKQNHLEDLMSQVSQLTKDNSEILTSINITTRHYLKVEAENSILRAQMGELSQRLQSLNDILSLINTTTGSYDERDCYQTSAQNFMNMRCFNQPITASADFFQW* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02407 142 CDD bZIP_plant_GBF1 22 72 IPR045314 GO:0003700|GO:0006355
Rops10g02407 142 SUPERFAMILY Leucine zipper domain 21 74 IPR046347 GO:0003700|GO:0006355
Rops10g02407 142 MobiDBLite consensus disorder prediction 1 47 - -
Rops10g02407 142 SMART brlzneu 17 81 IPR004827 GO:0003700|GO:0006355
Rops10g02407 142 Gene3D - 19 101 - -
Rops10g02407 142 MobiDBLite consensus disorder prediction 1 17 - -
Rops10g02407 142 Coils Coil 37 57 - -
Rops10g02407 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 7 126 - -
Rops10g02407 142 Pfam bZIP transcription factor 21 72 IPR004827 GO:0003700|GO:0006355
Rops10g02407 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 19 82 IPR004827 GO:0003700|GO:0006355
Rops10g02407 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 24 39 IPR004827 GO:0003700|GO:0006355
Rops10g02407 142 FunFam BZIP transcription factor 19 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02407 Rops-Chr10 42241025 42242276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02407 17 142 bZIP Transcription Factor Family AT4G34590 50.000 6.74e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops10g02407 bZIP_1 2.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02407 K25786 - gmx:778188 173.711