Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02402 ATGGAATCTACCAATCTCCATCAGCTCCAAGACCAACCTCAAGCTGTTGAGCCTTCTTCTTTATCCACCCCATCTTCCTATGGAGTTGGTGGAAGCAGCCATACTTGGACTCCAAATTTCACTTTAAATGCAGATTACTTCAACCTAAACCTTCAAGAGGCTAATCCCAGATCAAGAGCTGTAACCAACAAGAATGATATTCGGGTCCCTCCACATCCTCTAAGTGATTCTATGATTCAAGATTTAGGTTATCATCACTGGACAAGTGAAGGAGAAAGTTGCTTGACTAGTAATCAGTCGAGTCATCACTTAGACTTGCAGTTTTCGAAGATTAAGGGAGAGATCTCGGTTCCTTTCCCCAAATTCAGTGAAATGCTAAACAGTCCTTCAAGCATGGAAAGCTATCATCTTCCTTCCACTTCCACAACAACACAGATGAAGAATGAGCTCAAAGATATGAATGCTCTCAATGAGAAGCTCTTGCTCAAGACCCTTTTTTCTGGAGACTTCTATTCTACTAGTGCTCAAAATTATCCTAATTTTGGTGGAACAAGTGTACCCAGTAGAGGGAACTTTAGCCAGATTTACCCCAGTATAAATATCTCAAACTTGAACCAGTCATCTACTTCCATTGCAATTTCAAGCTCCTTGGATATGAGCACGCAGTCTTTAGATCTATTAACCTCAGCAAGATCATTTAGTGCGGGTTTGAGCCAGCATTCACAAAATCATGATCTTGGTGGATTTACTGACAACCTTTCTTTTAGTCTTCACCATATGCAGCACCCCACTGACAGGTCCTCGTCTAGTAACTCTAGTAATCTATCACACTTCACCAATGGCACGGAAGAAACAAAGAGACCCTGCACTTTGATGGAGGCAAAGGCTTCTCAATCTCAAACCGCATCAAAGAAATCACGTTTGGAATCACGCCCTTCATGCCCACCCTTTAAGGTTAGGAAAGAGAAATTAGGAGATAGGATTGCGGCACTTCAGCAGTTGGTGGCTCCTTTTGGCAAGACAGACACAGCATCCGTACTCATGGAAGCTATTGGATACATTAAATTTCTTCAAGGTCAAGTCGAGACACTGAGCGTTCCATACATGAAGTCATCGCAGAACCAGACCAACAGAGTGATACAAGGGGGTTCAGCCACAGGCAACGCAAATGGGGAACCAAAGCAAGATCTTAGAAGTCGAGGCCTCTGTCTCGTGCCATTGTCGTGCATGTCGTACATAGCAGGTGATGGCGGCAGTGAGGTGTGGCAACAGCCAAACTTTGGCAGACCAACTTAG 1296 0.4383 MESTNLHQLQDQPQAVEPSSLSTPSSYGVGGSSHTWTPNFTLNADYFNLNLQEANPRSRAVTNKNDIRVPPHPLSDSMIQDLGYHHWTSEGESCLTSNQSSHHLDLQFSKIKGEISVPFPKFSEMLNSPSSMESYHLPSTSTTTQMKNELKDMNALNEKLLLKTLFSGDFYSTSAQNYPNFGGTSVPSRGNFSQIYPSINISNLNQSSTSIAISSSLDMSTQSLDLLTSARSFSAGLSQHSQNHDLGGFTDNLSFSLHHMQHPTDRSSSSNSSNLSHFTNGTEETKRPCTLMEAKASQSQTASKKSRLESRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQTNRVIQGGSATGNANGEPKQDLRSRGLCLVPLSCMSYIAGDGGSEVWQQPNFGRPT* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02402 431 MobiDBLite consensus disorder prediction 260 308 - -
Rops10g02402 431 MobiDBLite consensus disorder prediction 1 31 - -
Rops10g02402 431 Gene3D - 318 380 IPR036638 GO:0046983
Rops10g02402 431 MobiDBLite consensus disorder prediction 260 318 - -
Rops10g02402 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 371 IPR036638 GO:0046983
Rops10g02402 431 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 166 411 - -
Rops10g02402 431 CDD bHLH_AtbHLH_like 315 365 IPR045239 -
Rops10g02402 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Rops10g02402 431 FunFam Transcription factor bHLH123 family 318 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02402 Rops-Chr10 42162558 42166673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02402 22 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 42.217 9.75e-68 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02402 - - mtr:25490216 471.855