Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02396 ATGCTATCCCAATTGGTAAAGGAGCATCCTTTCATTTGTTACTATGTTGGTCTCTTCTTGGTGTTTTTATCATGTCAAAAAGCATGGGTGCTTTGGTGTAACAAAAACAAGTTCGCTATTGCCATTCCTCCGGGAAATCGAGGATTACCCTTTGTAGGAGAGACATTGCAGTTCATGGCTGCCATCAACAGCAGCAAAGGAGTCTATGAATTTGTCCGAGTTCGCCGCCTCCGATATGGAAATTGCTTCAAGACCAGGTTGTTTGGGGAAACGCACGTTTTTATTTCGAGCAGGGAGTCAGCAAAAACGATTCTAAACAACGAGGGAGGGAAATTCTCAAAGAAGTACATAAAGTCAATCGCAGAGCTCCTTGGTCCTGATAGCTTGCTCTGTGCTTCTCAGCAGTATCACAAACTCATACGTGGGCGTCTCTTCAGTTTGTTCTCAACTGATTCTTTGTCATCCTTCGTTGAACTGTTCGATGCACTTGTTCTTGAAGCTATGAGTAACTGGACATGTGGATCCATTGTGATCATACAAGATGAAGCACTCAAGCTAGCTTGTAAGGCGATGTGCAAGATGCTAATAAGCGTTGAAAGTGGCTATGAACTAGAGATGATGCAAAAGCAGGTTGCTCGTGTGGGTGAAGCAATGCTTGCATTTCCCTTGAGATTACCTTGGACCAGATTCTACAAAGGCCTTGAGGCTCGAAAAAGAATTATGGACATATTGGAGAAGAATATCAATGAAAGAAGAAGTGGAACTGCAACTAGCCATGTAGATTTTCTTCAACAACTTTTAACAGAAGATGATAATAAATCAGACGTGAATGAAGTCCCAAGGCTAACAGATAGAGAGATCAAAGATAATATCTTAACTATGATAATTGCAGGACAGGATACTATAGCAATTGCAATGACATGGATGATCAAATTTGTGGGTGAAAATCAAGAGGTTCTTAATACACTTATGAAGGAGCAACTTCAGATTAAGAAAAAAAGCACAGGAAATGCCTATCTTACACTAGAGGCTCTTAATGAGATGCCATATGCTTCTAAGCAGGTCGTAAAAGAAGCATTAAGGATGGCATCTGTAGTGCAGTGGTTGCCCAGAGTAGCACTGGAGGACTGTGAGATTGAAGGATTTAAAATCAAGAAAGGGTGGAACATTAATATTGATGCTAGATCAATACACTGTGATCCAACTGTGCACAAGGATCCGGATGTGTTCAATCCTTCAAGATTTCCTGCAGAGTCAAAACCATACAGCTTCTTAGCTTTTGGGATGGGAGGAAGGATCTGTCTTGGGAAGAACATGGCTAAAGCCATGATGTTGGTGTTTCTCCACCGTCTCGTCACCAGTTACAAGTGGAAGGTGATTGATTCTGACTCAAGTATTCAGAAATGGGCACTTTTTACAAAACTTAAGAGTGGATGTCCGGTACTTTTGATATCTAAGAAGGAGGACACAAACAAAACTGAGGATCACGATCTAAATTTGCGAGCAACTCAAATGGGGACTTGA 1524 0.4134 MLSQLVKEHPFICYYVGLFLVFLSCQKAWVLWCNKNKFAIAIPPGNRGLPFVGETLQFMAAINSSKGVYEFVRVRRLRYGNCFKTRLFGETHVFISSRESAKTILNNEGGKFSKKYIKSIAELLGPDSLLCASQQYHKLIRGRLFSLFSTDSLSSFVELFDALVLEAMSNWTCGSIVIIQDEALKLACKAMCKMLISVESGYELEMMQKQVARVGEAMLAFPLRLPWTRFYKGLEARKRIMDILEKNINERRSGTATSHVDFLQQLLTEDDNKSDVNEVPRLTDREIKDNILTMIIAGQDTIAIAMTWMIKFVGENQEVLNTLMKEQLQIKKKSTGNAYLTLEALNEMPYASKQVVKEALRMASVVQWLPRVALEDCEIEGFKIKKGWNINIDARSIHCDPTVHKDPDVFNPSRFPAESKPYSFLAFGMGGRICLGKNMAKAMMLVFLHRLVTSYKWKVIDSDSSIQKWALFTKLKSGCPVLLISKKEDTNKTEDHDLNLRATQMGT* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02396 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Rops10g02396 507 SUPERFAMILY Cytochrome P450 40 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 Gene3D Cytochrome P450 33 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 CDD CYP90-like 75 483 - -
Rops10g02396 507 PANTHER CYTOCHROME P450 26 42 461 - -
Rops10g02396 507 Pfam Cytochrome P450 43 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Rops10g02396 507 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g02396 507 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02396 Rops-Chr10 42114689 42118983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02396 30 457 Cytochrome P450 AT1G19630 59.165 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02396 - - lang:109327951 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02396 10 42114689 42118983 Rops10g02396 10 42114689 42118983 ECH