Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02394 ATGATGAAGCATCGTTTCTTTTTGGTTTTCTTAGTTCTCTTTGTGACACTAGAGCGGGGGATCCTACTCCATGTAGAAGCAGATTCTGGGTTTGTGAAAGCAAGAGGGGTACAGCTTGTGTTGAATGGGAGCCCCTACTATGCTAATGGTTTTAATGCCTATTGGTTAATGTATGTTGCCTCTGATCCATCTCAGAGAAACAAGGTCTCATCAGCGTTTCAAGAGGCTGCAAATCATGGACTTAACATAGCAAGAACTTGGGCTTTCAGTGATGGTGGATATAAGCCCCTACAATACTCTCCTGGGTCCTACAATGAGGAAATGTTCCAGGGGTTGGACTTTGTATTAGCTGAAGCCGGAAAACATGGGATCAAGTTGGTGTTGAGTTTGGTGAACAACTATGAGAACTTTGGAGGAAAAAAACAATATGTGGAGTGGGCTAGGAGTCAGGGCCAATCCATTAATTCCGAAGATGATTTCTTCACAAATCCTGTAGTGAAGGGATACTATAAAAATCACATAAAGACTGTACTCGCAAGACGTAACAGCCTCAATGGAGTTGCTTACAAAGACGACCCAACTATAATGGCTTGGGAGCTAATGAATGAGATTAGATGCCCTTCAGATGAATCAGGAAAATCGGTTCAGGCTTGGATAACAGAGATGGCATCATACTTGAAATCCATCGATGGAAACCACTTGCTTGAAGCTGGTTTGGAGGGTTTCTACGGGCAGTCAAAGCCTGAATCTAACCCTAACTTCCAAGTTGGGACAGATTTCATTGCAAACAACCAAATCCCCGGCATTGATTTTGCAACAGTTCACTCCTACCCGGATCAATGGCTATCAAGTTCAGGTTATGAAGACCAAATCTCTTTCTTAGGTAGGTGGCTCAATGAGCACATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTATTTGCTGAGTTTGGTATTTCCTCAAAGAATTTCGGCACCAACTCAACACCAAGGGATGAGTTCTTCAACACAGTATATTCAGCAATATATTCATCAGCAAGCAGTGGAGGGGCTGCTGTTGGTGGCTTATTTTGGCAACTTTTAGCTGAAGGAATGGATTCATTTCGAGATGGTTACGAGGTTGTCTTAGGTGAGAGCCCCTCAACAGCTACCTTGATTGCTCAACACTCTCAAAAACTAAACCGAATTCGCAAGATGTATGCCAGACTTAGAAACATTGAAAAATGGAACAAATCAAGGGAAATTAGAAGTTCACAATGGCATGCTGGTGGTGATGGTGGAAACTGA 1290 0.4287 MMKHRFFLVFLVLFVTLERGILLHVEADSGFVKARGVQLVLNGSPYYANGFNAYWLMYVASDPSQRNKVSSAFQEAANHGLNIARTWAFSDGGYKPLQYSPGSYNEEMFQGLDFVLAEAGKHGIKLVLSLVNNYENFGGKKQYVEWARSQGQSINSEDDFFTNPVVKGYYKNHIKTVLARRNSLNGVAYKDDPTIMAWELMNEIRCPSDESGKSVQAWITEMASYLKSIDGNHLLEAGLEGFYGQSKPESNPNFQVGTDFIANNQIPGIDFATVHSYPDQWLSSSGYEDQISFLGRWLNEHIQDAQNILHKPLLFAEFGISSKNFGTNSTPRDEFFNTVYSAIYSSASSGGAAVGGLFWQLLAEGMDSFRDGYEVVLGESPSTATLIAQHSQKLNRIRKMYARLRNIEKWNKSREIRSSQWHAGGDGGN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02394 429 PANTHER - 6 417 IPR045053 GO:0004553
Rops10g02394 429 FunFam Mannan endo-1,4-beta-mannosidase 6 28 398 - -
Rops10g02394 429 SUPERFAMILY (Trans)glycosidases 31 386 IPR017853 -
Rops10g02394 429 Pfam Cellulase (glycosyl hydrolase family 5) 64 330 IPR001547 GO:0004553|GO:0071704
Rops10g02394 429 Gene3D Glycosidases 27 398 - -
Rops10g02394 429 Coils Coil 387 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02394 Rops-Chr10 42079435 42088760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02394 7 414 Glycoside Hydrolase AT5G66460 64.720 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02394 K19355 - gmx:100794126 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02394 10 42079435 42088760 Rops10g02394 10 42079435 42088760 ECH
Rops9g02702 9 50772071 50775854 Rops10g02394 10 42079435 42088760 PCT