Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02382 ATGGGTTGGACACGAGAAGAGAACAGGCGTTTTGAGGATGCTCTTGCGGTTCATGGCCCAGATGACCCCAACAGGTGGCAACAGGTGGCGAACGCTGTTGGTGGAAAATCCGTAGAAGAGGTGAAAATGCACTATGAGATTCTCAAAGAAGATGTCATTCGAATAGAGCGTGATCAAATCCCACTACCCAGGTACAGAGGTGCTGGCATCAATAATGGAAGGGGTGGCGATGAGCAAAGCAGGCGAACGAGGAATCTAAATCTCCAGTGA 270 0.4963 MGWTREENRRFEDALAVHGPDDPNRWQQVANAVGGKSVEEVKMHYEILKEDVIRIERDQIPLPRYRGAGINNGRGGDEQSRRTRNLNLQ* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02382 89 FunFam Transcription factor SRM1 1 62 - -
Rops10g02382 89 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 72 IPR044636 GO:0003700
Rops10g02382 89 SMART sant 3 51 IPR001005 -
Rops10g02382 89 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Rops10g02382 89 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Rops10g02382 89 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Rops10g02382 89 CDD SANT 3 49 IPR001005 -
Rops10g02382 89 Gene3D - 2 51 - -
Rops10g02382 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Rops10g02382 89 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Rops10g02382 89 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02382 Rops-Chr10 41930677 41931586 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g02382 Myb_DNA-binding 7.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02382 - - gmx:100789698 149.058