Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02363 ATGCCAATTTCTACAACTACCAGAGAAGAAGAAGTTACCTTCTCCATATCCTCTGGGTTAGAAAGCATGCCTCAACCACAACCACCACCACCCAAAAAGAAACGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAGGTGATTGCTTTATCACCCGAGACTCTATTAGCGAAGAACCGTTTCGTGTGTGAGATCTGCAACAAAGGATTCCAACGCGACCAGAACTTGCAGCTTCACCGGCGAGGTCACAACCTGCCATGGAAGCTCCGACAGAGAACGACAAATGAAATCCGCAAGAGAGTGTATGTGTGCCCTGAGCCTTCATGCGTCCACCACAACCCATCCAGAGCGCTGGGTGACCTCACCGGCGTGAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGAACGCTGTTCCAAGAAATACGCCGTACAATCCGATTGGAAAGCACATATGAAAACTTGCGGAACTAAAGAGTATAGATGTGACTGTGGCACCTTGTTCTCTAGGAGGGATAGCTTTATCACACACAGAGCTTTTTGCGATGTGTTAGCGGAAGAGAGTGCTAGAGAACAAGCCCTAGCTGGTGGCAACGTTGTTGTGGCTTCTTCTTCTTCTCCACCTACGCCACCACTTACTCCGTCTACAACTGTGGTGTCTCCAACTTTGTCTATTCAGAGCTCAGAAATTCCTGAAAACCCAACGCCACCGTCTTCCAACGCAACGTGTTTAGTGAAGGCTGCTGCCACAACCAGTACCCCTTCCAGTTGTAGCACTGTTTTTCCAAGTGTGTTGGCAATGGCATCACAATCAACTTCCTCATTCTCCAATCCCATGTCAAATTTGGGTCACTCGGATTGCCCAGCAACCATGTCTGTTATAGAACCCACATCCCTCTCACTCTCCACACCACTCTATCTCTCCAACAATGACCCATCATCATCATCCCTATACACTGCATCTCCACAACCAGCTGCATTATCTGCCACTGCATTACTCCAAAAGGCAGCTCAAATGGGTGCATCCAATTCATCCTTGCTTCGGGGTTTAGGCTTAGCAACATTAACATCATCCTGCGTGAAAAATAGCACAACAATACAGTGGAACGGGCATGGCCATGTAAAGCAAGAGAATAATCAGGCGATGGCAGATAATAACCTTGGGCTTGGACTTCCATGTGGAAATGGGAGTGTGGTTGATGTGATGATGGGATCCTCTGGCCAACCCATGACCCGTGATCTTCTTGGTCTAAACATCGGTAGTGGTGGTGGTGGTGGTGGTCTTTCTGCTTTACTTACCTCTTTTCAAGGGAACTTCGATTCATCTGGTGGTGATGGAGGAATTAACCAGTAG 1365 0.4813 MPISTTTREEEVTFSISSGLESMPQPQPPPPKKKRSLPGMPDPDAEVIALSPETLLAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEIRKRVYVCPEPSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTKEYRCDCGTLFSRRDSFITHRAFCDVLAEESAREQALAGGNVVVASSSSPPTPPLTPSTTVVSPTLSIQSSEIPENPTPPSSNATCLVKAAATTSTPSSCSTVFPSVLAMASQSTSSFSNPMSNLGHSDCPATMSVIEPTSLSLSTPLYLSNNDPSSSSLYTASPQPAALSATALLQKAAQMGASNSSLLRGLGLATLTSSCVKNSTTIQWNGHGHVKQENNQAMADNNLGLGLPCGNGSVVDVMMGSSGQPMTRDLLGLNIGSGGGGGGLSALLTSFQGNFDSSGGDGGINQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02363 454 Gene3D Classic Zinc Finger 42 106 - -
Rops10g02363 454 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g02363 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 425 IPR031140 -
Rops10g02363 454 MobiDBLite consensus disorder prediction 1 44 - -
Rops10g02363 454 FunFam protein indeterminate-domain 12-like 40 108 - -
Rops10g02363 454 SMART c2h2final6 61 83 IPR013087 -
Rops10g02363 454 SMART c2h2final6 137 157 IPR013087 -
Rops10g02363 454 SMART c2h2final6 102 132 IPR013087 -
Rops10g02363 454 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Rops10g02363 454 MobiDBLite consensus disorder prediction 204 223 - -
Rops10g02363 454 Pfam Zinc-finger of C2H2 type 61 83 - -
Rops10g02363 454 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Rops10g02363 454 Gene3D Classic Zinc Finger 114 195 - -
Rops10g02363 454 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Rops10g02363 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02363 Rops-Chr10 41676436 41679172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02363 1 436 IDZ Gene Family AT3G50700 49.362 3.47e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops10g02363 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02363 K25869 - gmx:100800089 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02363 10 41676436 41679172 Rops10g02363 10 41676436 41679172 ECH