Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02351 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACTCCAATAACAACAATAGCAATGATGCTGGCAATTTTGAATGCAATATTTGCTTTGAATTAGCACAAGACCCTATAATTACTTTGTGTGGTCACCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCACTCACAGTCACGAGAATGCCCTGTATGCAAGGCCCTCGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGCGAGGGAAGGCATCATCTGATCCAAGATCAAAATCTATTCCAGGTGTTAACATCCCACATCGTCCCACTGGTCAGAGACCTGAAACCGCTCCGCCACCTGAATCAAATCGTTTTCATCAACATGGGTTTGGATTCATGGGTGGGTTGGGGGGGTTTGCGCCGCCAATGGCAACTGCAAGATTTGGGAATTTCACGTTTTCCACTGGATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGATGCATGGGTTTCATGATGGGACCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGATTTTCTAATTCATTTCATGGTGTTCATGCTCATAGATATCCTCCACGCACACGACAAGGGCAACAAGATTATTTTCTGAAGAGGCTGCTTCTGTTTGTTGTGTTTTGTGTTTTTCTTGCTTTTATTTGGCAATAG 693 0.4488 MASGFGESTSRSPPSPSYSNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKASSDPRSKSIPGVNIPHRPTGQRPETAPPPESNRFHQHGFGFMGGLGGFAPPMATARFGNFTFSTGFGGFIPSLFNFQMHGFHDGTMYGGAAGFPYGFSNSFHGVHAHRYPPRTRQGQQDYFLKRLLLFVVFCVFLAFIWQ* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02351 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Rops10g02351 230 MobiDBLite consensus disorder prediction 86 120 - -
Rops10g02351 230 SMART ring_2 32 72 IPR001841 -
Rops10g02351 230 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g02351 230 CDD RING-HC_AtRMA-like 30 74 - -
Rops10g02351 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Rops10g02351 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops10g02351 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Rops10g02351 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Rops10g02351 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Rops10g02351 230 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02351 Rops-Chr10 41428251 41428943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02351 20 229 C3H Transcription Factor Family AT2G23780 59.009 6.71e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02351 K10666 - gmx:100527488 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02351 10 41428251 41428943 Rops1g01695 1 35629454 35630692 ECH
Rops10g02351 10 41428251 41428943 Rops10g02351 10 41428251 41428943 ECH