Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02346 ATGTTTTCCGTTAACAAAAAAAGGAAGGAATTTAAACTACTATATGAACGTATAGCAATCTGCATTGTGGGTTGGCTTTGCAAAATTTTTAAAAGCTCCAAGCGTAAAACTTTAAAAATGCATCATCATGCAAATTATGAAGAGGATTCAAATTCACCATCCATTTCAGGGGATGTGTTGTCAGAGAACGAGAATAAAGACATAGGTGGTGCTACTGCACTATCTCTGGCAGAAGAAAACAAAATTGGAAGTAATATTAATGACTGCAATTCACAGTCAGCAGACGAAAAACTTGCCAGAGCCATGGAAGAAAGCCTAACTTTGGAGTCTCCTCCTAGGATCTGTGCTGGTTGCAATACGGAGATTGGGGATGTCCCATATTCTGAATGTTCGAATACATTCTGGCATCCTGAATGCCACCGCTGCCGAGCTTGCAATGGAATAATCACTGAACGTGAGTTCCGTACATGTGAAGATTACAGTTACCATAGATCATGCTTTAAAGATCCAAAATGTGATATTTGCAAGCACTATATTCCCAAAAACCCTGATGGTGGGATTATGTTTGGAAGGATTTTTTTCTGGAACCAATTGTTTTGCCCTTCTCATAGCGATGATGGTACTCCCAAGTGTTTCAGCTGTAACCGAATGGCGCCACGAGATTCAGAATTTATTGATGTTGACGATGTTCGGAAGCAATGCTTAGAGTGTCAGGACTCTACTATCATGGATACCAAGGAATGTCAACCCCTTTATATTGACATACAGAAATTTTATGAAGGTCTAGATATGAAACTGGACAACCAAATTCCTCTACATTTGGTTGGGAGACAAGTGCTGAATGAGGGGAAGAATAATGGCAACTGCATTGAGACAACAGGACTTTGCCACATAGAGAAACGGACTACCAGCACTATCACGACCTATAAGGTGATGGCAATACTTATTCTGTATGGTCTTCCAAGGTTGCTTACTGGATCGATCCTAGCTCATGAGATGATGCATGCATGGCTGAGACTTGAAGGTTATCACACCCTAAATGAAGAAGTTGCAGAAGGTATATGTGATGTTATGGCTTATATGTGGTTAGAGGCTGAGCTCTCTCTTGCACTAGACAACAATCCTACATCAGCTCCATCCTCATCTGCAACCAATGCATCTAGGAAAGGTAAGATGCCTCATTTTGATAGGAGACTTGGGGAGTTCTTTAAGCACAAGATCGAATCAAACAAGCGCCCTGTTTATGGAGATGGATTTAGGGTAGGTCAACAGGCAGTGAGCAAATATGGTCTAAAAAAGACCCTTCACCATATCCGGAAGACAGGAAAATTTCCATTTTGA 1341 0.4094 MFSVNKKRKEFKLLYERIAICIVGWLCKIFKSSKRKTLKMHHHANYEEDSNSPSISGDVLSENENKDIGGATALSLAEENKIGSNINDCNSQSADEKLARAMEESLTLESPPRICAGCNTEIGDVPYSECSNTFWHPECHRCRACNGIITEREFRTCEDYSYHRSCFKDPKCDICKHYIPKNPDGGIMFGRIFFWNQLFCPSHSDDGTPKCFSCNRMAPRDSEFIDVDDVRKQCLECQDSTIMDTKECQPLYIDIQKFYEGLDMKLDNQIPLHLVGRQVLNEGKNNGNCIETTGLCHIEKRTTSTITTYKVMAILILYGLPRLLTGSILAHEMMHAWLRLEGYHTLNEEVAEGICDVMAYMWLEAELSLALDNNPTSAPSSSATNASRKGKMPHFDRRLGEFFKHKIESNKRPVYGDGFRVGQQAVSKYGLKKTLHHIRKTGKFPF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02346 446 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Rops10g02346 446 SMART lim_4 114 166 IPR001781 -
Rops10g02346 446 CDD LIM_DA1 115 167 - -
Rops10g02346 446 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Rops10g02346 446 PANTHER PROTEIN DA1-RELATED 2 25 445 IPR045218 -
Rops10g02346 446 Pfam Protein DA1 300 440 IPR022087 -
Rops10g02346 446 Gene3D Cysteine Rich Protein 94 151 - -
Rops10g02346 446 Pfam LIM domain 115 153 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02346 Rops-Chr10 41374043 41395034 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops10g02346 DA1-like 1.3e-55 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02346 - - tss:122661919 476.478