Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02345 ATGCATGCTCAGACATTTTTCCATCTAGCCACCAATCAATTTGAGACCTTTTTCTCTCCATCTCAGGATCAGGAAAATAGTCACAACATGAATTATACAGTGTTTCTCCTCATTCTTTTCACTCAAAGCTTTCTTCTGTGTTCAAATACCACAGCACAGCAAAATTACTCAGGAAATTCAATACTAAGCTGCAAGAACAATGACACAACAGGGCCTTCTCCAGCTTTCCTTTACACATGCAATGGTGTCCACAAAACCTGCAAGGCCTTCCTCATCTTCAAATCCCAACATCCTTACAATTCCACCACCACAATTTCCAACCTCACATCATCAAACCCAGAAGAGCTTGCCACCATCAATAACGCCACTTTGCTCACAGTATTCCCTACTGGCAAAGAGGTAATAGTCCCTGTGAACTGTACCTGTCTAACAAGGAACTATTACCAAGCTGAAAGCAAATATGTATTGCCCCCACACCCAACATATTTTACAGTAGCAAATAATACCTATCAGGGGCTGTCCACATGTGATTCTATCAAACGTGTAAATCCATATGGGGTGCTAGATTTGTTACCTGGAATGGAATTGCACGTGCCACTCAGATGTGCTTGTCCAACGAGGCATCAAACCATGAATGGCACCAAGTATTTACTCACTTATCCTGTGAACTGGGGTGATAATATTTCTTGTATTGCCAAAAGATTCAATGTTTCTGCAGGTAGTCTAGCTGATGCCAATGGTTTTTCCTCTGAAAATCAACTGCTTTACCCATTCACAACTGTTCTGATTCCTTTGCCAAGTGATCCTAAGAGTTCAGTGACCATAATTCATAATGATCAACCAACCACTTCACCTCCTCTTGTTTCCAATAAGAGTAAGACAAAAAGAAAACTCTTCATTGCTGTAGCCACCACAGGGAGCTTGATGCTTGTTCTCTGTGTCATTTTATCTGCGGTGTTTCTGCTCAGAAAGAGAAGAGCAAGGTTCTTGAAAAGAGGTAGTATAAAAGGTAATAGGATGCTGGTGTCTTCACAAGGCATCCGTGAGGAGATAGCATGCATTGAGCATCACTCCAAAGTGTACAGGTTTGAAGAAATACAGGAAGCCACTGAGAATTTCAGTCCAAGGAATAGAATAAAAGGGTCTGTTTATCTCGGGGTGTTGGGTGATAAGAGGGAAATCTTTGCTATCAAAAAAATGAATGCAGATGCATCCAAGGAAGTGAATTTGTTGGGAAAAATCAATCATTTCAACCTGATAAAGCTGCAAGGTTATTGTAAAAACAATGGCTTCTTTTGCCTTGTTTTTGAATACATGGCAAATGGCTCTTTAAGAGAATGGCTTGGTAAAAGCAGGTCCATAGAACACCAGAGTTGGGCAAAGAGGATCCAGATTTCTCTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAGCCTTGTTATGTGCACAAGAACATTAGCACTGGCAACATTCTACTGAACAAAGATCTAAGGGCCAAGATTGCAAATTTTGTCCTAGCTGAAGAATCAGATAGAGAATTAACCTCCGGTTCTCCCACATTACAAGTTGTGGGAACCAGGGGTTATATGGCCCCAGAGTATCTGGAGGCAGGGATAGTCACTTCCAAAATAGATGTCTATGCCTTTGGAGTGGTGCTGCTGGAATTGATTACGGGTAAGGATTTTATTATTGTGCAGGATGGAAGAGAAGAAATGCTTTCAACAGTCATGGTAAATCTGATTAGTAAAGATAATGCACAAGAGAAACTCAGTTTGTTCATAGATCCTCGACTCAATGGGAACAGCTGGAAAGAATTGGCTCTTAAGCTAGTTAGACTAAGTCTAACATGTTTGATGGAAGAACCTGCAAGGAGACCAAACATGGCAGAGGTTGTCTCTAGCTTGTTAAAATTATATTCAGAAATAGACAGAACCCGACATCAATTGCAGCACACGCCAGGAGAGGTGAATTGA 1983 0.4105 MHAQTFFHLATNQFETFFSPSQDQENSHNMNYTVFLLILFTQSFLLCSNTTAQQNYSGNSILSCKNNDTTGPSPAFLYTCNGVHKTCKAFLIFKSQHPYNSTTTISNLTSSNPEELATINNATLLTVFPTGKEVIVPVNCTCLTRNYYQAESKYVLPPHPTYFTVANNTYQGLSTCDSIKRVNPYGVLDLLPGMELHVPLRCACPTRHQTMNGTKYLLTYPVNWGDNISCIAKRFNVSAGSLADANGFSSENQLLYPFTTVLIPLPSDPKSSVTIIHNDQPTTSPPLVSNKSKTKRKLFIAVATTGSLMLVLCVILSAVFLLRKRRARFLKRGSIKGNRMLVSSQGIREEIACIEHHSKVYRFEEIQEATENFSPRNRIKGSVYLGVLGDKREIFAIKKMNADASKEVNLLGKINHFNLIKLQGYCKNNGFFCLVFEYMANGSLREWLGKSRSIEHQSWAKRIQISLDIANGLQYLHNFTEPCYVHKNISTGNILLNKDLRAKIANFVLAEESDRELTSGSPTLQVVGTRGYMAPEYLEAGIVTSKIDVYAFGVVLLELITGKDFIIVQDGREEMLSTVMVNLISKDNAQEKLSLFIDPRLNGNSWKELALKLVRLSLTCLMEEPARRPNMAEVVSSLLKLYSEIDRTRHQLQHTPGEVN* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02345 660 Gene3D Transferase(Phosphotransferase) domain 1 439 656 - -
Rops10g02345 660 Pfam LysM domain 222 264 IPR018392 -
Rops10g02345 660 Gene3D LysM domain 205 275 IPR036779 -
Rops10g02345 660 CDD LysM 219 263 IPR018392 -
Rops10g02345 660 ProSiteProfiles LysM domain profile. 218 263 IPR018392 -
Rops10g02345 660 Gene3D Phosphorylase Kinase; domain 1 345 438 - -
Rops10g02345 660 FunFam PTI1-like tyrosine-protein kinase 3 439 652 - -
Rops10g02345 660 SUPERFAMILY LysM domain 218 264 IPR036779 -
Rops10g02345 660 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 37 646 - -
Rops10g02345 660 ProSiteProfiles Protein kinase domain profile. 373 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02345 660 Pfam Protein kinase domain 381 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02345 660 SUPERFAMILY Protein kinase-like (PK-like) 356 638 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02345 Rops-Chr10 41367903 41369885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02345 30 641 Receptor kinase-like Gene Family AT2G23770 38.035 2.04e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops10g02345 Pkinase 3.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02345 - - gmx:100806221 818.15