Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02336 ATGGGAGAGGGTGGTGGTGCCGCCAGTGAAGGGCCAGTCTCCGATGGGATTAAAATGGAGCACGGCGAAGAGGGCGACCGGAATTCCGCCATGAACCGGTGGCCTCGGGAGGAGACAATGGCTTTGCTCAATATAAGGTCCGAAATGGACGTTGCTTTTAGAGATACCAGCCCCAAAGCCCCTCTATGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATAATAGGAATGCTAAGAAGTGCAAGGAGAAGTTTGAGAACATTTACAAATACCACAGGAGGACCAAGGAAGGTCGTTGTGGCAGACCCAACAGTGGCAAAACCTATCGATTTTTCGAGCAATTGGAAGCTTTAGATAGCCACCCACCTCGTTCATCCTCGGAGGGACAACTACTTGTTCCTCCTCCTGATAACAACAACGTTAATGTCATCGAAGATGCAGTTCCTTGTTCCATTAGATTCCCGAGTGCAAACATGATTGAAAATTCCAGTTCAACCACTTCCTCATCTTCCGGGGAAGGTACACGGAGAAAGAAGAGGAAGCTGACGCGGTTTTTGGAGGGGCTTATGAGGGAGGTGATAGAGAAGCAAGAAACACTTCAGAGGAAGTTCATGGAGGTGTTGGATAAGTGTGAGAGGGATCGAATAGCGAGGGAGGAAGCGTGGAAGGTTGAAGAGTTGGCTAGGATTAAAAGGGAACGTGAGCTTCTGGCTCAGGAAAGATCAATTGCTGCAGCAAAGGATGAAGCGGTGTTAGCCTTTTTGAAAAAGATCAAAGAGGGAACGGTGCAGTTACCAGAAAAAATTCAGGTTCCAAATGATAAACACAATAAGGAGGACATGCAAGAAAATGGGAATGGGAATGGGAATGGAGATAAGCAAGAATGTGGAAATGTTAATGTTGGGAATTTCATACACATGAGCTCAGCGCGTTGGCCCAAGGATGAAGTGGAGGCATTGATAAGGTTGAGGACTCAGCTTGATGTGCAGTCACAAGGGAATGGGTCTAAAGGACCTCTTTGGGAGGAGATATCTTTGGCAATGAAAAACCTTGGCTATGATCGCAGTGCTAAGAGGTGCAAAGAGAAATGGGAGAATATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAATAAGAGAAAGCCTGAGGATTCAAAAACGTGTCCTTATTATCACCATCTCGAAGCTTTATACAGTAAAAAGCCTAAGAAGGTGGATGGTGAGGCTGCTTCTGTTAACGACTTGAAGCCTGAGGAGCTATTGATGCATATTATGGGGAGTCAAGAAGATAGACAGCGGCTAGAGTCGTCATCTGAAGATGCTGACAGAGAGAACACGGATCAGAACCAGGGAGATAATGAAGATCAAGATGGGTATCAAATGGTTGCTAATAGTCCTTCCATACCAATCATGAGTTAA 1422 0.4571 MGEGGGAASEGPVSDGIKMEHGEEGDRNSAMNRWPREETMALLNIRSEMDVAFRDTSPKAPLWEQVSRKLAELGYNRNAKKCKEKFENIYKYHRRTKEGRCGRPNSGKTYRFFEQLEALDSHPPRSSSEGQLLVPPPDNNNVNVIEDAVPCSIRFPSANMIENSSSTTSSSSGEGTRRKKRKLTRFLEGLMREVIEKQETLQRKFMEVLDKCERDRIAREEAWKVEELARIKRERELLAQERSIAAAKDEAVLAFLKKIKEGTVQLPEKIQVPNDKHNKEDMQENGNGNGNGDKQECGNVNVGNFIHMSSARWPKDEVEALIRLRTQLDVQSQGNGSKGPLWEEISLAMKNLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEALYSKKPKKVDGEAASVNDLKPEELLMHIMGSQEDRQRLESSSEDADRENTDQNQGDNEDQDGYQMVANSPSIPIMS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02336 473 CDD GT1 312 376 - -
Rops10g02336 473 FunFam Trihelix transcription factor GT-2 34 95 - -
Rops10g02336 473 CDD GT1 32 97 - -
Rops10g02336 473 ProSiteProfiles Myb-like domain profile. 26 90 IPR001005 -
Rops10g02336 473 MobiDBLite consensus disorder prediction 453 473 - -
Rops10g02336 473 MobiDBLite consensus disorder prediction 424 451 - -
Rops10g02336 473 MobiDBLite consensus disorder prediction 423 473 - -
Rops10g02336 473 MobiDBLite consensus disorder prediction 1 34 - -
Rops10g02336 473 SUPERFAMILY Homeodomain-like 310 381 IPR009057 -
Rops10g02336 473 ProSiteProfiles Myb-like domain profile. 312 369 IPR001005 -
Rops10g02336 473 Gene3D - 313 374 - -
Rops10g02336 473 Gene3D - 34 95 - -
Rops10g02336 473 Pfam Myb/SANT-like DNA-binding domain 311 398 IPR044822 -
Rops10g02336 473 Pfam Myb/SANT-like DNA-binding domain 32 119 IPR044822 -
Rops10g02336 473 MobiDBLite consensus disorder prediction 274 296 - -
Rops10g02336 473 MobiDBLite consensus disorder prediction 16 33 - -
Rops10g02336 473 MobiDBLite consensus disorder prediction 160 181 - -
Rops10g02336 473 PANTHER FI21293P1 12 455 - -
Rops10g02336 473 FunFam Trihelix transcription factor GT-2 313 374 - -
Rops10g02336 473 SMART sant 30 92 IPR001005 -
Rops10g02336 473 SMART sant 309 371 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02336 Rops-Chr10 41189429 41191863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02336 23 404 Trihelix Transcription Factor Family AT1G76880 45.043 5.59e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops10g02336 Myb_DNA-bind_4 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02336 - - pvu:PHAVU_009G147500g 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02336 10 41189429 41191863 Rops10g02336 10 41189429 41191863 ECH