Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02329 ATGAAGAGGTCCCTTCTCCTAAAAGACCTCTCGTTCTTCTCTCCTTCTTCATCATCACCAGCTCACGCGCTTCTTGTTCGTCTTCATCTCTCTCATATTTCATCATCATCATCTCCTCCTTCTCCTCCTCAGCCTTACTGGAAGCGTCAAGAAGAGGAGTCACGCAACGTTAGGGTTTGCGTTTGGTGGGATTTCGAGAATTGCAACGTCCCCATTGGCGTTAACGTTTTGAAGGTGGCCCCAGCAATCACGGACGCTGTGAGGGCAAACGGGATTAAGGGTCCAATTCATATAACCGCTTTTGGAAATGTCATGCAACTCTCCAAGGCCAACCAGGAAGCACTTTCTTACACCGGGATTCATCTCACCCACATTCCAAATGGTGGAAAGAATAGTGCCGATAGATCTCTTCTGGTTGATCTTATGTATTGGGTTTCTCAAAATCATCCACCTGCACATCTCTTTCTGATATCGGGTGATAGAGACTTTGCTGGCATGTTGCACCGGTTAAGAATGAATAACTACAATATCTTGCTTGCGACTCCAGGAAAGGCTGCTGATGCTCTCTGCAGTGCAGCAACTATAATGTGGCAGTGGTCATCGTTGCTTAAGGGAGAAGATCTTACTGGCAAACATTTCAATCATCCTCCTGATGGTCCATATGGTTCTTGGTATGGAAACTATAAGGTGCCTCTTGAAAATCCCTTCTCATCCGCAGAGCAGTCTACATCTTCACTAAATGTGGAGGTCTATGAGCCTTCCTCGGACTTAAAGATAGGCCCAGTTCCAAAGTCAGTTGCAAGGCAGGTTAGGCAGATACTGAATTCACATTCAAGTGGGATCCCCATCACAGATGTTCGGGCAGAGTTGGCAAAATGTGGTGTGCGTTTGGATAAAAACCTATATGGATATAAAAGATTTTCCCGCCTTCTATTATCAATTCCACACGTACAGCTTCGGCCTTTAGGTGATGGTAATTTTTGTGTATGTTTGATCCCCTCAAAATCCCCTGAACCTTCCAAGAGCAGTGCTGTGCCATCAACATCTGCTGTTGAGAATGAGGAGGGGGGCTATGAAACAACTCTGAAGCTAAATTGTGAGGGTAAAAATATGGATAGAGATGCAGATGAGGCTCCCTCAATGGCCTCATTGTATGAAAGGAGCATGGACGATGATTCAAAATCATTCCAACCGGTCCCTTCCCAAGGTAAAAATATTGGGGAATATATGGATGGTAAATCATCTTCCCTGGGTAGTGAGAAGGTTGGGGATGTGGCTAATGCACAGTTGTCGGAGATTCAACTGCCAACGAAGGACAATGAAGTTTCCAAAACTAAGACTAGTTCCTTAAAAATGAGATCTAAAAATTCGCATGTTAATGAAATTGTTAGGTCTGACGATGTAAGTCCCAAAATTCTGGAAAAATATACAATTTCAGGGAATGACTCTGCTGAGAATGATTACACTACAGCAGAAAGCAATGGTTTTGCAAATTATGAATCTGGAAAATTTAAAGCAAAGAACGAATCTATGAATCCAATTGAAAAAGAGGTTAATGAAGTTTATCACAGCCCAGATTCTTCACCAGTTGATGACTCTCCTGTGGCTGAGAAAAGACCTGATGGAAGTGCTGAAACTTATAGCAAAAGTCCAACCTTCTTTATCTGGATTAAAAGTTGGTGGCCATTTTGGAAAAGCAGTGCAAAGTATGATGATTCAACTGCTCATCAGAACAAGGTGGTTAGCCATTTTGAGGATCCCGCAAAATTATCTGAAGAGGATCAGACTGTTGGTCATTTTAAAGAGCCCAAATTATCAGAACTGGACCAGGATGTTAGTCATTCTGCAAGGCCTGAGTTATTTTCTAGTGGTTCCTTTTGGAGTGACCTGGAATGTTTTGTTTTCTCACCCAAAGGATCACTTCTTTTCTCCCATTCAAGAAGCAGGGAGGATATGGCAAATAAATTACAAAAGGACGGACCCCTGGTTCTTAGATCTCTCACTGAAAACGATATCTTTCAGTTGGTGGAATTATTAATAACAGAGAAAAAATGGTTGGAGGAGAGCCCCTCCCGAGCATTTCCTTTTAGGCTAACTCAACCAGTTCAGAAGAGATCATTGATGGGCCAATCTCACGGTGCAAATGGCTTGAGATCTCTTTTTCTAAGTAGAACATCACAGACACAGTCCAACTTGCAAAAATCATTTGAATATGATGTGGAGAAACACAATCATAGTGTTCATCATACTAGAGTCTCCACACCTACCCCTGAAACGAAACAAACTGAGAGGACTAGGAATGATATATTAGTAGACTGTCAGAAACTTGTGAGTGAGATATTGAGGGAACACCCAGAGGGATATAATATTGGTTCTTTTCGAAAACAATTTGTTGATAGGTATGGCTATCATCTTGATTTGCAGAAGCTTGGTTATCAAAAGTTGGCTTCCTTGTTACAAATAATGCCTGGAGTTAAATTAGAGTCCACTTATATTTATCCTTCTTCTCCTGCTGTTTGTGCTTCTGACGGGGAAACTTCTATGCCAAAAACTCAATTAACCAATGCTAGTCATGCAGTATCCAACTCAGATGATGAATTATCTGATTCAGCCCCAAAAGATGATAACATGGAAAGTCAATGGGAGGAATTAGGTCCTGTTTCTGTCGACAATTCCGACCAAAGTGATCTGGAATCAAAATTCGGTCAGAAAGCCAAAGAACTAGAAACATTGAAGCATCCTGATTATGAACCCATCGTCCCAGATTATGATTCTTCTGAATCTGAAGGAGATGATAGCTCTTGTTTAACTCAACCTGAAGAGCAAGGGAAGCCAAAATGTAATGAACAAGACAGTTCTTTTTGGCAAGCTCTAGATTCGTGGCACAGCAGCAAGGAAGGAGAGAACAGTGTCAAGAAGTCAGACAATGGTGACGTCTTGGGCATTTCTCTGGCTGATATTTTAAATTCACCCACTGAGTCGACCCGGGGTACCCCTTCTAAAATTCCTTCAGGGAATTACAGAGAGAAGCAAAGATATCAAAAGAACTATTCATTTGTGGCTGACCCAGACTTGCCTAACAAGGACAAGCTGATTGATGGGATATTAGATGGCTTCAAGAAAGTAGATGAGTCAAAGATGCAAAACTGA 3150 0.419 MKRSLLLKDLSFFSPSSSSPAHALLVRLHLSHISSSSSPPSPPQPYWKRQEEESRNVRVCVWWDFENCNVPIGVNVLKVAPAITDAVRANGIKGPIHITAFGNVMQLSKANQEALSYTGIHLTHIPNGGKNSADRSLLVDLMYWVSQNHPPAHLFLISGDRDFAGMLHRLRMNNYNILLATPGKAADALCSAATIMWQWSSLLKGEDLTGKHFNHPPDGPYGSWYGNYKVPLENPFSSAEQSTSSLNVEVYEPSSDLKIGPVPKSVARQVRQILNSHSSGIPITDVRAELAKCGVRLDKNLYGYKRFSRLLLSIPHVQLRPLGDGNFCVCLIPSKSPEPSKSSAVPSTSAVENEEGGYETTLKLNCEGKNMDRDADEAPSMASLYERSMDDDSKSFQPVPSQGKNIGEYMDGKSSSLGSEKVGDVANAQLSEIQLPTKDNEVSKTKTSSLKMRSKNSHVNEIVRSDDVSPKILEKYTISGNDSAENDYTTAESNGFANYESGKFKAKNESMNPIEKEVNEVYHSPDSSPVDDSPVAEKRPDGSAETYSKSPTFFIWIKSWWPFWKSSAKYDDSTAHQNKVVSHFEDPAKLSEEDQTVGHFKEPKLSELDQDVSHSARPELFSSGSFWSDLECFVFSPKGSLLFSHSRSREDMANKLQKDGPLVLRSLTENDIFQLVELLITEKKWLEESPSRAFPFRLTQPVQKRSLMGQSHGANGLRSLFLSRTSQTQSNLQKSFEYDVEKHNHSVHHTRVSTPTPETKQTERTRNDILVDCQKLVSEILREHPEGYNIGSFRKQFVDRYGYHLDLQKLGYQKLASLLQIMPGVKLESTYIYPSSPAVCASDGETSMPKTQLTNASHAVSNSDDELSDSAPKDDNMESQWEELGPVSVDNSDQSDLESKFGQKAKELETLKHPDYEPIVPDYDSSESEGDDSSCLTQPEEQGKPKCNEQDSSFWQALDSWHSSKEGENSVKKSDNGDVLGISLADILNSPTESTRGTPSKIPSGNYREKQRYQKNYSFVADPDLPNKDKLIDGILDGFKKVDESKMQN* 1050
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02329 1049 MobiDBLite consensus disorder prediction 743 763 - -
Rops10g02329 1049 Gene3D - 263 332 IPR041966 -
Rops10g02329 1049 Pfam NYN domain 58 193 IPR021139 GO:0004540
Rops10g02329 1049 CDD LOTUS 772 825 - -
Rops10g02329 1049 ProSiteProfiles OST-type HTH domain profile. 769 843 IPR025605 -
Rops10g02329 1049 Gene3D - 49 201 - -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 336 355 - -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 841 879 - -
Rops10g02329 1049 PANTHER LIMKAIN B LKAP 33 779 IPR024768 GO:0005777|GO:0010468
Rops10g02329 1049 MobiDBLite consensus disorder prediction 336 357 - -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 930 950 - -
Rops10g02329 1049 Pfam OST-HTH/LOTUS domain 263 326 IPR025605 -
Rops10g02329 1049 Pfam OST-HTH/LOTUS domain 774 828 IPR025605 -
Rops10g02329 1049 CDD LOTUS 263 331 - -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 907 950 - -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 389 408 - -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 841 866 - -
Rops10g02329 1049 CDD PIN_limkain_b1_N_like 58 182 - -
Rops10g02329 1049 Pfam OST-HTH Associated domain 647 691 IPR025677 -
Rops10g02329 1049 Gene3D - 764 831 IPR041966 -
Rops10g02329 1049 ProSiteProfiles OST-type HTH domain profile. 262 333 IPR025605 -
Rops10g02329 1049 MobiDBLite consensus disorder prediction 522 546 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops10g02329 Rops-Chr10 41127863 41132176 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02329 58 205 C2H2 Transcription Factor Family AT5G61190 43.919 1.77e-35 144
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02329 - - tpra:123916554 1257.28