Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02328 ATGGATTTGGACGATTTCCGATCCATATTGGACACGGCGGGCGTTGACGTCTGGATGTTCATCGACACCGCAATAACCGTCGCTTCCTTGGATTATTCCGGCGACTTGAAGCGCCGGAGAGACGGAATCGTCGAGCGTCTCTACGCGGCGACATCGGCGACTCCGCGGTGCCGGAATTGCGACGGCAACAATCGTATCAAGTCCAATGGCCATGAAATCAAGAAACAGAGTAGCCCTAGCCCTAGCCCTGAACGACAACGACACCATCGTCGTGGTGCTTCCTCTCCCGCAACGCCGCAGTCTCTTGGAAACGACAATGAAAACGAAAACGCCAACGACGATGAGTTAGATCCTTACGGTGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAACAACTCGAGGAACCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTTCAAAATCTCGCGGACATGGATATTACATTCCAAGCGCTAAAGGAGACTGACATAGGGAGGCACGTGAATCGGTTACGGAAGCATCCATCCAATGATGTTCGGAGATTGGTGAAGCTACTTGTCAGGAAGTGGAAGGAAATTGTAGATGAGTGGGTGAAGTTGAATCCACAAGGAGGAACCAACACTCTCATGGCTGATGGAGACTCGCCTCAGCAGAAAACCACCCAAAATGGGCATAATCATCATCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGGTCTGACCGCAACAACTCAGAAGCAGAACCAAAACCAAAAGTGATTCCTCGCAAAGAAGCTCCACCAAAACCAACCCCATCACCATTAGTTACTACCCCTGCTTCTGCTTCTGCTTCTGCTTCTCAAAACAGACAGAGAGAACAGAGAGAGAGCAATTTTGACGCGGAGAGGCTTGCTTCAGCAAGAAGAAGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAAGCAAAGAACAATTCAGGTGATGGACATCCATGAGTTACCAAAGTCAAAATCCAAGAATGCCGCCTTTGGAAAGAACAAAGGTGGCGGTGGTTCCCAAGGAAGGCACTGGTGA 1092 0.489 MDLDDFRSILDTAGVDVWMFIDTAITVASLDYSGDLKRRRDGIVERLYAATSATPRCRNCDGNNRIKSNGHEIKKQSSPSPSPERQRHHRRGASSPATPQSLGNDNENENANDDELDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGTNTLMADGDSPQQKTTQNGHNHHQIPDFAYSPNPHNGSSGSDRNNSEAEPKPKVIPRKEAPPKPTPSPLVTTPASASASASQNRQREQRESNFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKSKSKNAAFGKNKGGGGSQGRHW* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02328 363 Pfam TFIIS helical bundle-like domain 150 199 IPR017923 -
Rops10g02328 363 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 210 IPR035441 -
Rops10g02328 363 MobiDBLite consensus disorder prediction 207 234 - -
Rops10g02328 363 MobiDBLite consensus disorder prediction 93 107 - -
Rops10g02328 363 Coils Coil 305 332 - -
Rops10g02328 363 MobiDBLite consensus disorder prediction 241 255 - -
Rops10g02328 363 ProSiteProfiles TFIIS N-terminal domain profile. 125 202 IPR017923 -
Rops10g02328 363 MobiDBLite consensus disorder prediction 280 296 - -
Rops10g02328 363 MobiDBLite consensus disorder prediction 59 122 - -
Rops10g02328 363 SMART TFS2_5 130 201 IPR003617 GO:0005634
Rops10g02328 363 MobiDBLite consensus disorder prediction 207 309 - -
Rops10g02328 363 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 210 IPR035441 -
Rops10g02328 363 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 363 IPR044790 -
Rops10g02328 363 MobiDBLite consensus disorder prediction 339 363 - -
Rops10g02328 363 CDD TFIIS_I 127 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02328 Rops-Chr10 41119835 41122453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Rops10g02328 Med26 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02328 - - aip:107622503 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02328 10 41119835 41122453 Rops10g02328 10 41119835 41122453 ECH
Rops10g02328 10 41119835 41122453 Rops2g00818 2 11732033 11734589 ECH
Rops2g00818 2 11732033 11734589 Rops10g02328 10 41119835 41122453 PCT