Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02320 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAAGACAAAGACTCTAGCAAGAAGAAGAAGGATAGCAGCGACAAGACCGAAAGGAGCTACCGGAAGCGCGAGGAGATGGACGATGGCTCCGATGACAGGAGGAGCAAGAGGTCCAGGGGTGACGAAGAGAATGGCTCCAAGAAGGATAAAGATCGTGATGACCGCGACAAAGAGCGCCATAGGAGGAGTAGCAGAGATAGAGAAAGGGATAGGGACGGTGAGAGAAGTAGTAGAGACAGGGACAGGGAGAAGGAGAAGGAGAGAGACAAAGAGAAAGATAGGAGAGACAGGGACAAAGAGAGGGAGAAGGAGAAGGAGAGGAGAGATAGGGAAAGGGAGAAGGAGAGGGACAGAAAGGAGAGAGAAAGGGAGGAGATAGAGAGGTCCAGGAGGAGCCGGAGTCGTTCTGAGAGAGATAGAGATAGAGATAGAGAAAAAGAACGAGAATTCGAAACGAGAGATAGCAGAAAACTTAGGGAAAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCAACGGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTCATTATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGCAATGCGATAATGATGAGGGATGATGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAGTTTATATCACTTGAATTGGTTATAAGGCTAACATTTTCTTTACATGAGTCAGATACATCAAAAGATACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTACATCTCTTTGCTGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCGATTGCTCTATCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTTAAACCTTCCGAAGCTGAAAAGAACCTAGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAGCTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTACAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTAACCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGATCCAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGATCGCTCTGGCATTGCTGCAAGCATTGGTTTACCTGGTGTAAATGGGTCAGCTCCTGCTCATCAGGCTATTAGCTTGCCTATTGGTAATCCAGGTTTAATACCAGCACCAACACCAGCTCTCCCAACACAAATTATGCCTACCCAGGTGGCTGAACCTGTTGGAACTCCTAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCATCCACTGAGACAGAACCAGATTTTGATCTAGACATCAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTTTGGGCGGGTGAAGCATATCTATGTTGACAAAAGAACTGCAGGTTTTGTGTATTTGCAATTTGAAACAGTGGAAGCTGCAAGTGCAGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGATTGATTTCAGCCATCTACATGCAACCTCAGATATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1875 0.4485 MDFDEYDYLEKTVEEQEDKDSSKKKKDSSDKTERSYRKREEMDDGSDDRRSKRSRGDEENGSKKDKDRDDRDKERHRRSSRDRERDRDGERSSRDRDREKEKERDKEKDRRDRDKEREKEKERRDREREKERDRKEREREEIERSRRSRSRSERDRDRDREKEREFETRDSRKLREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVLKFISLELVIRLTFSLHESDTSKDTQLELSALEFLFPYISLLYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFIQFNHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDPTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPGVNGSAPAHQAISLPIGNPGLIPAPTPALPTQIMPTQVAEPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKFGRVKHIYVDKRTAGFVYLQFETVEAASAAQRAMHMRWFARRLISAIYMQPQIYEAKFKGEV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02320 624 NCBIfam splicing factor, CC1-like family 301 620 IPR006509 GO:0003723|GO:0005634|GO:0006397
Rops10g02320 624 Gene3D - 121 343 IPR012677 -
Rops10g02320 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 436 IPR000504 GO:0003723
Rops10g02320 624 Coils Coil 99 155 - -
Rops10g02320 624 CDD RRM2_RBM23_RBM39 360 437 - -
Rops10g02320 624 Gene3D - 525 623 IPR012677 -
Rops10g02320 624 MobiDBLite consensus disorder prediction 1 192 - -
Rops10g02320 624 SMART rrm1_1 531 608 IPR000504 GO:0003723
Rops10g02320 624 SMART rrm1_1 359 432 IPR000504 GO:0003723
Rops10g02320 624 SMART rrm1_1 193 256 IPR000504 GO:0003723
Rops10g02320 624 CDD RRM1_RBM39_like 193 329 - -
Rops10g02320 624 FunFam Splicing factor, CC1-like protein 525 624 - -
Rops10g02320 624 SUPERFAMILY RNA-binding domain, RBD 358 613 IPR035979 GO:0003676
Rops10g02320 624 Gene3D - 354 449 IPR012677 -
Rops10g02320 624 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 451 548 IPR029123 -
Rops10g02320 624 FunFam Splicing factor CC1-like 342 447 - -
Rops10g02320 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 236 IPR000504 GO:0003723
Rops10g02320 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 236 IPR000504 GO:0003723
Rops10g02320 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 430 IPR000504 GO:0003723
Rops10g02320 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 553 606 IPR000504 GO:0003723
Rops10g02320 624 CDD RRM3_RBM39_like 529 611 - -
Rops10g02320 624 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 620 IPR006509 GO:0003723|GO:0005634|GO:0006397
Rops10g02320 624 MobiDBLite consensus disorder prediction 12 191 - -
Rops10g02320 624 SUPERFAMILY RNA-binding domain, RBD 183 237 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02320 Rops-Chr10 41044343 41051919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02320 330 431 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.88e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02320 K13091 - gmx:100802446 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00825 2 11822157 11828839 Rops10g02320 10 41044343 41051919 ECH
Rops10g02320 10 41044343 41051919 Rops10g02320 10 41044343 41051919 ECH
Rops2g00825 2 11822157 11828839 Rops10g02320 10 41044343 41051919 PCT