Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02318 ATGGTTGGTCGGAAAAGGTGGTTATCGCTGGCTGCCATGGTTGGCCGGAGAAGGTGGTCACCGCCGGTGGCTATGATCAAGGGTGCTAGATTTTGCTTTGATTGCTTTTTCATGTGTTGTATGTTAAAGGTGGCGAATCAAGGAGACAAGGTTGACAAGAGAGAATTCCATGAAGGGGTTATAAACGACCCTGCTGCATTGTCAATGCAAATGACATTTCCAGGAGTGAATAGGGAGCAAGAGATGTTTGCCATGGTCTCAGCTTTGACCCACGTGGTCTCTGGAGACATACCAAGCGGTGATGATGATGATCATCATTTGGCCCCACAAACAAGGGTATTTGAAGGAGGTGGTGATGTTGCTAATGCTGATAAACAAAACATGACTTCTCCTTCTGCAACACCCTCTTTGTCTTCTTCAGCTAATTATGTTGGTGGTTCTTCTTTAAAGAGAAATAGGGAAGATGATTCAACAACCATCCCATATGGTGCTTCATCATCCCCTGCCATAACAATTGCAGAATGTTCAAGCAATTGGAGCAGTGACAGAACAAGAGTAACTGGGGAAATGGGAAATGTTGTATATGAATATAGAAGAACAGAGAATATGGTGAGCGAAGAAGGAAGGAGAAAATACAGAGGGGTGAGACAGAGACCATGGGGGAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCATCAAGGGTTTGGTTAGGAACATTTGACACAGCTGAAGGAGCTGCAAGAGCATATGATGAAGCAGCACTGCGTTTCAGAGGGAACAAAGCAAAACTCAACTTCCCTGAGAATGTGACTCTCCTACGACAACCTCAACCGACCCAATGGAGGACCATTACCACTTCTTCTTCTTCTTCTGCTCCAACTTCACTTGTCTCTGTTTCAACCTCCACCGACCCAATTGTTCACTCTCAACCACTTCCACCACCTCCAACCAATTTTTCAGAGTATTTCCACCTCACGAACCTTTATGATGATCAGATAATTATGACATCTACAATGGCTTCACATATTCAGTCTTCGTCGTCGTTTTCTTCTTCTTCTTCTGCGTTTTCAACTCTGACTTCTTCTCAGCAGGACACTTCACTTCCTTCGTTTTATTCTACCCAGTTTTCGCCATGGTCAGCTGCTGGTTCTACCTCTTCTTCCTCGGGATGA 1176 0.4464 MVGRKRWLSLAAMVGRRRWSPPVAMIKGARFCFDCFFMCCMLKVANQGDKVDKREFHEGVINDPAALSMQMTFPGVNREQEMFAMVSALTHVVSGDIPSGDDDDHHLAPQTRVFEGGGDVANADKQNMTSPSATPSLSSSANYVGGSSLKRNREDDSTTIPYGASSSPAITIAECSSNWSSDRTRVTGEMGNVVYEYRRTENMVSEEGRRKYRGVRQRPWGKWAAEIRDPFKASRVWLGTFDTAEGAARAYDEAALRFRGNKAKLNFPENVTLLRQPQPTQWRTITTSSSSSAPTSLVSVSTSTDPIVHSQPLPPPPTNFSEYFHLTNLYDDQIIMTSTMASHIQSSSSFSSSSSAFSTLTSSQQDTSLPSFYSTQFSPWSAAGSTSSSSG* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02318 391 PANTHER DNA-BINDING DOMAIN 166 360 IPR044808 GO:0003700|GO:0009873
Rops10g02318 391 MobiDBLite consensus disorder prediction 281 314 - -
Rops10g02318 391 ProSiteProfiles AP2/ERF domain profile. 211 268 IPR001471 GO:0003700|GO:0006355
Rops10g02318 391 MobiDBLite consensus disorder prediction 123 147 - -
Rops10g02318 391 FunFam Ethylene-responsive transcription factor 2 210 269 - -
Rops10g02318 391 Pfam AP2 domain 211 260 IPR001471 GO:0003700|GO:0006355
Rops10g02318 391 CDD AP2 211 270 IPR001471 GO:0003700|GO:0006355
Rops10g02318 391 MobiDBLite consensus disorder prediction 281 308 - -
Rops10g02318 391 SMART rav1_2 211 274 IPR001471 GO:0003700|GO:0006355
Rops10g02318 391 Gene3D AP2/ERF domain 210 270 IPR036955 GO:0003700|GO:0006355
Rops10g02318 391 PRINTS Ethylene responsive element binding protein signature 234 250 IPR001471 GO:0003700|GO:0006355
Rops10g02318 391 PRINTS Ethylene responsive element binding protein signature 212 223 IPR001471 GO:0003700|GO:0006355
Rops10g02318 391 MobiDBLite consensus disorder prediction 115 163 - -
Rops10g02318 391 SUPERFAMILY DNA-binding domain 211 269 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02318 Rops-Chr10 40998004 41006254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02318 219 313 AP2-EREBP Transcription Factor Family AT5G64750 64.706 1.33e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g02318 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02318 - - mtr:11421690 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02318 10 40998004 41006254 Rops10g02318 10 40998004 41006254 ECH
Rops2g00830 2 11868240 11868563 Rops10g02318 10 40998004 41006254 ECH