Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02315 ATGGGATGCGTTTTTGGCAAGTTTTCTTCCCCTCGCAGAACTGAGGGGCCTAAACGGCACAATGGACAAGTAAAGAGAGTTGTTAGCAGGAAGGATTCAAGGACACGAACCTCTAAGCATGTGGGAGTTGGGTTGAAAAGGGAAACTCAGAGACAAAGAGTGAGTGTTCATCATAGTAAGGATTCAACTGCAGAGAATAATGCACAGAAGAAGATTTCATTAAGTGATGTGAATGCTAGTGGTGTTGTAGAAGGAGAAAAGGAAAAGCCGGTTGCAAGAGAAGAGAAGAAGAGTAAGGTATGGGATGTTGGGGAGAAGAAGATTGCAGGACATGATTTTGTGGATGGGTGGCCAAAGTGGTTAGTCGATAATATCCCCAGAGATGTTTTGGCTTCTCTGGTTCCTAAGAGTGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGTAATGTGTACAAAGCCAGAGATAAGGGCACAGGAAAGATTGTTGCTTTGAAGAAGGTACGCTTTGACACATCAGATTCTGAAAGTATCAAGTTTATGGCAAGAGAGATCATGATATTGCAGAAGCTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACTTCAAGGATGCAGTGTAGTCTTTATCTTGTTTTTGATTTCATGCAGTCAGATCTCACCCGGATTATCACCCGACCCGGGGAGACACTCACTGAAGCACAGATCAAGTGCTATATGCAGCAGCTGCTTTCTGGTCTCCAGCACTGTCACGAGAGGGGAGTTATGCACCGAGATATTAAATCTTCTAACTTGTTAGCAGACAAAAGAGGGGTACTGAAAATTGCAGATTTTGGGCTTGCAAATTCTTTTTCAGCCAATAGGCATCGTACAAATAGAGTGGTTACCCTTTGGTACAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTTTAGCATTGATCTCTGGAGTGCAGGATGCCTATTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTACTGGAGAAAACTGAAGCTAACAACAAGCTACCGGCCACCACAACATTACAAACCTAGATACCAAGAAAGCTTTAAGAATTTTCCTTCCTCTTCCTATGGCCTGTTGGCCACACTTCTTGATCTTGACCCTACCCGTCGTGGCAGTGCTGCCTCTGCTCTCCGAAGTGAATTCTTCAAATCTAGTCCATTAGCATGCGACCCTTCAGCTTTACCAGTAATCTACAAAGACGTGGATGAACGCTCACAAACCAAGAGACGCAAAAGACAACGGGTTTTGAAAAGAAGGCCACTATCTCAAACAAGTACAAGTGATGTGAGTCAGTCAGTAAAGAACCATACTAAAGAACAACCCAGGAGAGATTCGAAATCGTCAAAAGAGAAGAAGATTATGGAACAACACAAGCAAGGTCAAGGTCAAGAAATGGCCAATAGTGCAAGCAGCAGCACATCATCAGTCTCAAAACTACTTATGAACGAAGGGAGCATGAATGCATCTCTATCTCCCGTTTTTATCTCTAGTGGGAGAAAATCCCCCAAAACCGAGGGCCATCCAAATGCTCTTAAGAACATAAAGAACTATAGCACTCTCTTACAAGCCTCAATGATGGATATGATCAACCGCAATGAAGACAATGAATTTGTTCAGCGTCACAGGTCCTTCTCTACGTTGGATTTTCGACTTGATCCAGAGAAGTTAGCTAACCTCTATGGATTACCTAAAAAGATTTAG 1818 0.4285 MGCVFGKFSSPRRTEGPKRHNGQVKRVVSRKDSRTRTSKHVGVGLKRETQRQRVSVHHSKDSTAENNAQKKISLSDVNASGVVEGEKEKPVAREEKKSKVWDVGEKKIAGHDFVDGWPKWLVDNIPRDVLASLVPKSADSYEKLAKIGRGTYSNVYKARDKGTGKIVALKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLEGLATSRMQCSLYLVFDFMQSDLTRIITRPGETLTEAQIKCYMQQLLSGLQHCHERGVMHRDIKSSNLLADKRGVLKIADFGLANSFSANRHRTNRVVTLWYRAPELLLGSTDYDFSIDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSEDYWRKLKLTTSYRPPQHYKPRYQESFKNFPSSSYGLLATLLDLDPTRRGSAASALRSEFFKSSPLACDPSALPVIYKDVDERSQTKRRKRQRVLKRRPLSQTSTSDVSQSVKNHTKEQPRRDSKSSKEKKIMEQHKQGQGQEMANSASSSTSSVSKLLMNEGSMNASLSPVFISSGRKSPKTEGHPNALKNIKNYSTLLQASMMDMINRNEDNEFVQRHRSFSTLDFRLDPEKLANLYGLPKKI* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02315 605 SMART serkin_6 141 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02315 605 MobiDBLite consensus disorder prediction 443 515 - -
Rops10g02315 605 MobiDBLite consensus disorder prediction 458 473 - -
Rops10g02315 605 Pfam Protein kinase domain 141 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02315 605 SUPERFAMILY Protein kinase-like (PK-like) 136 427 IPR011009 -
Rops10g02315 605 MobiDBLite consensus disorder prediction 474 497 - -
Rops10g02315 605 MobiDBLite consensus disorder prediction 499 515 - -
Rops10g02315 605 MobiDBLite consensus disorder prediction 1 94 - -
Rops10g02315 605 PANTHER CELL DIVISION PROTEIN KINASE 139 426 - -
Rops10g02315 605 CDD STKc_CDK9_like 141 421 - -
Rops10g02315 605 Gene3D Phosphorylase Kinase; domain 1 130 223 - -
Rops10g02315 605 FunFam Putative serine/threonine-protein kinase 224 459 - -
Rops10g02315 605 Gene3D Transferase(Phosphotransferase) domain 1 224 465 - -
Rops10g02315 605 ProSiteProfiles Protein kinase domain profile. 141 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02315 605 FunFam probable serine/threonine-protein kinase At1g54610 128 223 - -
Rops10g02315 605 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Rops10g02315 605 MobiDBLite consensus disorder prediction 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02315 Rops-Chr10 40961404 40965340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02315 136 453 Core Cell Cycle Gene Families AT5G10270 47.337 2.22e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops10g02315 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02315 K08819 - gmx:100782603 818.92