Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02313 ATGAAAAGCAGCAACTACCGTTGCTCTACGCTGCTGTTGCTCTTGGTCTTCTTCTCTCTGTCTCTTCACTCAAGACCATGTAGCTGTGGTTCTTCTTCTTCTTTGCCTTCAAGAGACCCCACAGAGCAACTGATCAACTTCAAAGCCACTCTCCCAAACCCATCACTGCTCCAAGACTGGCTCCCAAACAGAAACCCATGTTCATTCACTGGAATCACCTGCAACCAAACCCACCTCACTTCCATAGACCTCACCTCCATCCCCCTCAACACTAACCTCACAGTCATCACCACTTATCTCCTCACCCTTGAACAACTCCAAGTTCTCACCCTCAAATCCACCAACCTCACCACTGCCATTTCCATCTCACACACTTCCAAGTGCACCTCCTCTCTCACCACCATAGATCTATCACAAAACACCTTGTCTGGAACCTTTTCCTCCTTGTCGTTTTTATCTTCCTGCTCCAACCTTCAATCTCTCAACCTTTCCAACAACCACCTAGAATTCGACTCACCACGGTGGAGGCTCAGCCCTACCGTACAGATTCTAGACCTTTCTTACAACAAGCTTTCAGGTTCTGATGTTCTACCATGGATCCTTACACCTGGTTTGCAGCACCTTGCTCTCAGAGGAAACAAAATCACCGGCGAAACCGATTTCTCTAGTTGCACCACTTTACGCTATTTGGACCTTTCCTCTAACAATTTCTCAGTCTCCATTCCCTCTTTGGGTGAGTGCTCTGCTCTTGAACACCTTGACCTCTCTGCTAACAAGTACTTCGGCGACATTGGCCGCACCGTCGCCCCTTGCAAGCGCCTCCTCCATGTGAATATTTCCGGTAACCAGTTTTCCGGTCCGGTTCCTTCACTCCCCTCCGGTTCCCTGCAGTTTGTCTACCTCGCCGCCAACCACTTCCACGGCCAGATTCCGGTGAAACTCACCGACCTTTGTTCGATTCTCGTGGAACTCGATCTCTCCTCTAACAACCTCACCGGACCAGTCCCACGCGAGTTAGGTGCGTGCACTTCCTTGGAATCGTTCGATATCTCAAGCAACAAGTTCACCGGCGCGTTGCCGGTGGAGATTTTCGCTGAGATGAGCAGCTTAAGAGACCTGGCCGTGTCGTTCAACGAGTTCACCGGACCCATGCCTGAGTCACTGTCGAGTTTACTGAGTTTGGAATCGTTGGATCTGAGTTCTAACAACTTCAGCGGCCCAATCCGTAGTGGACTGTGTGAAGATCCTAGGAATAATTTGAAGGAACTTTACCTACAGAATAACCGTTTCACGGGTTTTATTCCCTCCACGCTCAGCAACTGTTCTAACCTCGTTGCTTTGGACTTGAGCTTCAACTTCCTCACGGGTACTATCCCTCCAAGTTTAGGGTCTCTCACAAAGCTTCGTGATTTAATCATGTGGCTCAACCAGCTCCATGGAGAGATACCCCAAGAGCTTAACCAGATGCAGAGTTTGGAGAATTTGATCCTTGACTTCAACGAGTTAAGTGGGAGCATTCCTTCTGGGCTAATGAACTGTACCAAGTTGAATTGGATCTCTTTATCAAACAACAGGCTCAGTGGTGAGATTCCGGCTTGGATTGGGAAGCTTTCGAATTTGGCAATACTGAAGCTCAGCAATAACTCCTTCTCCGGGAAGATTCCGGCGGAGCTGGGGGATTGTCCTAGCTTGATATGGTTGGATCTGAATACGAATTCATTAACAGGGCCAATCCCTCCGGAGTTGTTCAAGCAATCGGGGAAGATTGCGGTGAATTTCATCAGTGGGAAGACTTATGTGTATATAAAGAATGATGGTAGTAAGGAGTGTCATGGAGCTGGGAACTTGCTTGAGTTTGCAGGAATCAGTCAGCAACAGTTGAATAGGATTTCAACAAGGAACCCTTGCAATTTTACTAGAGTTTATGGAGGTAAGCTGCAGCCAACGTTTGACCATAATGGTTCTATGATATTTTTGGATTTGTCACACAACATGCTGTCTAGTAATATTCCAAAGGAAATTGGGGAAATGTACTATTTGTACATTCTGAATTTGGGTCACAATAACTTATCTGGAAACATTCCCCAAGAGCTTGGCAAAATGAAAAATCTCAACATCCTTGATCTCTCCAATAATAAGTTCCAAGGCCAAATTCCGCAAGCCTTGACAGGGCTTACCTATCTCACTGAGATGGACTTGTCCAACAATTATCTCTCGGGTTTGATCCCTGAATCTGGTCAATTTGATACCTTTCCGGCTAGTAGGTTCCAGAACAACTCTGGTCTCTGTGGTGTCCCTCTTCCTCCTTGTGGGGCAGATGCAGGAGCCAGTGCAAATGCTCATCATCAGAGGTCTCATAGGAGACAGGCATCTCTTGCGGGGAGTGTGGCCATGGGATTGTTGTTCTCACTGTTCTGTGTCTTTGGTTTGATTTTGATTGCCATTGAGACTAGAAAGAGGAGGAAGAAAAAGGAGGCTGCTATTGATGGCTACATTGATGGTAATTCTCATTCGGGTCCTGCCAATGTTAGCTGGAAACTGACCAGTGCTCGTGAGGCACTTAGCATCAACCTGGCAACATTTGAGAAGCCCCTTCGGAAGCTCACTTTTGCTGATCTTCTTGAAGCTACCAATGGTTTTCACAACGATAGTCTCATCGGTTCTGGAGGTTTTGGTGATGTGTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAATTAATACATGTCAGTGGACAAGGGGACAGGGAATTCACAGCTGAAATGGAAACCATTGGGAAAATCAAGCATCGAAACCTTGTTCCTCTTCTGGGCTACTGCAAGGTTGGCGAAGAAAGACTCTTGGTTTATGAGTACATGAAATACGGAAGTCTAGAAGATGTTCTGCACGACCCGAAGAAAGCTGGGATCAAGCTGAGCTGGACAGTGAGGAGGAAGATTGCCATTGGAGCTGCTAGGGGATTGGCTTTTCTTCACCACAATTGTATCCCCCACATTATTCATAGAGACATGAAATCAAGCAATGTATTGCTTGATGAAAACTTGGAAGCCAGGGTCTCTGATTTTGGAATGGCAAGGCTTATGAGTGCTATGGATACCCATTTGAGCGTTAGCACACTAGCAGGCACCCCGGGTTATGTTCCACCAGAATACTATCAGAGCTTTAGATGCTCCACTAAAGGTGATGTTTATAGTTATGGTGTAGTTTTGCTGGAGCTGCTAACAGGGAAAAGGCCAACAGATTCTGCTGATTTTGGTGACAACAATCTTGTGGGATGGGTTAAACAACATGCCAAACTGAAAATAAGTGATGTTTTCGACCCAGAACTCATGAAAGAAGACCCCAATCTGGAGATTGAGCTTTTACAACACTTAAAGGTAGCTTGTGCTTGTTTGGATGATCGACCTTGGCGGCGTCCTACAATAATTCAAGTCTTGGCAATGTTCAAGGAAATCCAGGCAGGGTCTGGGATGGATTCTCAGTCTACCATAGCCACCGAAGATGAAGGCTTCAATGCAGTTGAAATGGTGGAGATGAGCATTAAAGAAGCCCCTGAATTAAGCAAGCATTAG 3582 0.464 MKSSNYRCSTLLLLLVFFSLSLHSRPCSCGSSSSLPSRDPTEQLINFKATLPNPSLLQDWLPNRNPCSFTGITCNQTHLTSIDLTSIPLNTNLTVITTYLLTLEQLQVLTLKSTNLTTAISISHTSKCTSSLTTIDLSQNTLSGTFSSLSFLSSCSNLQSLNLSNNHLEFDSPRWRLSPTVQILDLSYNKLSGSDVLPWILTPGLQHLALRGNKITGETDFSSCTTLRYLDLSSNNFSVSIPSLGECSALEHLDLSANKYFGDIGRTVAPCKRLLHVNISGNQFSGPVPSLPSGSLQFVYLAANHFHGQIPVKLTDLCSILVELDLSSNNLTGPVPRELGACTSLESFDISSNKFTGALPVEIFAEMSSLRDLAVSFNEFTGPMPESLSSLLSLESLDLSSNNFSGPIRSGLCEDPRNNLKELYLQNNRFTGFIPSTLSNCSNLVALDLSFNFLTGTIPPSLGSLTKLRDLIMWLNQLHGEIPQELNQMQSLENLILDFNELSGSIPSGLMNCTKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGKIPAELGDCPSLIWLDLNTNSLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFDHNGSMIFLDLSHNMLSSNIPKEIGEMYYLYILNLGHNNLSGNIPQELGKMKNLNILDLSNNKFQGQIPQALTGLTYLTEMDLSNNYLSGLIPESGQFDTFPASRFQNNSGLCGVPLPPCGADAGASANAHHQRSHRRQASLAGSVAMGLLFSLFCVFGLILIAIETRKRRKKKEAAIDGYIDGNSHSGPANVSWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKLSWTVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNLEIELLQHLKVACACLDDRPWRRPTIIQVLAMFKEIQAGSGMDSQSTIATEDEGFNAVEMVEMSIKEAPELSKH* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02313 1193 Gene3D Phosphorylase Kinase; domain 1 841 955 - -
Rops10g02313 1193 ProSiteProfiles Protein kinase domain profile. 880 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02313 1193 Pfam Leucine rich repeat 515 574 IPR001611 GO:0005515
Rops10g02313 1193 Pfam Leucine rich repeat 680 738 IPR001611 GO:0005515
Rops10g02313 1193 Pfam Leucine rich repeat 419 477 IPR001611 GO:0005515
Rops10g02313 1193 Pfam Leucine rich repeat 344 404 IPR001611 GO:0005515
Rops10g02313 1193 Pfam Protein kinase domain 880 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02313 1193 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 649 769 - -
Rops10g02313 1193 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Rops10g02313 1193 SMART LRR_typ_2 562 585 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 701 724 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 537 561 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 391 415 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 317 342 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 489 513 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 725 748 IPR003591 -
Rops10g02313 1193 SMART LRR_typ_2 419 440 IPR003591 -
Rops10g02313 1193 CDD STKc_IRAK 886 1155 - -
Rops10g02313 1193 SUPERFAMILY L domain-like 295 759 - -
Rops10g02313 1193 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 75 290 - -
Rops10g02313 1193 SUPERFAMILY L domain-like 54 407 - -
Rops10g02313 1193 FunFam serine/threonine-protein kinase BRI1-like 2 841 955 - -
Rops10g02313 1193 Gene3D Ribonuclease Inhibitor 44 770 IPR032675 -
Rops10g02313 1193 ProSitePatterns Protein kinases ATP-binding region signature. 886 909 IPR017441 GO:0005524
Rops10g02313 1193 Gene3D Transferase(Phosphotransferase) domain 1 956 1157 - -
Rops10g02313 1193 FunFam Brassinosteroid LRR receptor kinase 956 1157 - -
Rops10g02313 1193 Pfam Leucine rich repeat N-terminal domain 42 75 IPR013210 -
Rops10g02313 1193 Coils Coil 475 495 - -
Rops10g02313 1193 Pfam Brassinosteroid receptor island domain 587 650 IPR045381 -
Rops10g02313 1193 FunFam Serine/threonine-protein kinase BRI1-like 1 594 651 - -
Rops10g02313 1193 Pfam Leucine Rich repeats (2 copies) 225 264 IPR025875 -
Rops10g02313 1193 Gene3D - 592 652 - -
Rops10g02313 1193 SMART serkin_6 880 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02313 1193 FunFam Brassinosteroid LRR receptor kinase 130 603 - -
Rops10g02313 1193 SUPERFAMILY Protein kinase-like (PK-like) 866 1158 IPR011009 -
Rops10g02313 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1002 1014 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02313 Rops-Chr10 40920028 40924060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02313 42 1189 Receptor kinase-like Gene Family AT4G39400 69.277 0.0 1567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Rops10g02313 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02313 K13415 - gmx:100799772 1866.28