Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02308 ATGGACGCTTCAACGAGATCATCACTCTTGGTTTTCTATCATGCTAAATACGATTTTTTCGAATCTTTACCTGATGACCTTGTAATCTCCATTTTCTGCAAGCTTAGCTCCACCGCCACTTGCCCTTCCGATTTTGTCAATGTTTTAATCACGTGTACAAGATTACACAGTTTAGCACTGCGTTCTCTTGTATTATCCAAAGCCTCTCCAAGAACTTTCTCTATTAAAGCCAAAGACTGGTGCAATTTGGCACACCGATTCCTCAAGCAGTGTGCCGATGCGGGAAACGTTAAAGCCTGTTACACTTTGGGCATGATTCGTTTTTACTGTTTACAAAACAGAGGAAATGGGGCTTCGTTGATGGCTAAGGCGGCGATAAGCTCACACGCTCGGGCTCTATACTTGCTCGCCGTTATTCAGTTCCAACTACAGAGAGGAACCAAAGCGACAAGGACCTCCGTCTGGCGTGGTCTGTATGCGCCAGAGCCACCTTCCTCGGCCACATCGATGCGCTGCGTGAGCTTGGCCATTGCTTGCAAGACGGTTACCGTGTCCGAAAGAACATACAATTATAATACATCTCCACCTTGCGCAGACCATGAACGTGACCATCAAAACCTCAAAGCCATCAATTTCAAACCAGAGAGTGAACGTCCATACAAACCAAGCCTTGGGACACTACTCTATCATCGCCACCGTCGATTTGAAGATAATGTGTCTGGCATTTCAAATGAAGATGATTCTAAGGAAAACAATTTGTACATTGAATCAGAATTTGTTAGCGATGTGCTTCCAGGCACCCATCCACCTAAAGATAATAATGTCATGGCACTTAATGGGAATTTATTGACATCAAAGCAAGTTGTTCCATCTATAATATTGGATATGCCTCTTTGGGGCCTGTTACTGGTTGTCCAAGATAACCAGTATGATTTGCACTCCAAAGTTGACAGTCTGGCTGTATATGACATCCTTACCAATTTTGAGGAGCGTTGGTTAAGGGCATTAAAAATGCATAAACTTCCAAAGATGAAAAGTTCACATGATGATTCATTACTGAAAATTGATAGAATCCCTGACATTGTTGGCATGGATGAAGTTTCTTGCCTAATGAAGATAAACCGGAGACTTGGCATGTTTAGTGAAAAGATTTCCGAAGGAACCAAAAGAAGTTATAAGAAGGGTGAAGTGACTTTATTCTCTTCTGAAGATTTTGCTTGTTACTGTGAAGGAAAGAGCTAA 1242 0.4235 MDASTRSSLLVFYHAKYDFFESLPDDLVISIFCKLSSTATCPSDFVNVLITCTRLHSLALRSLVLSKASPRTFSIKAKDWCNLAHRFLKQCADAGNVKACYTLGMIRFYCLQNRGNGASLMAKAAISSHARALYLLAVIQFQLQRGTKATRTSVWRGLYAPEPPSSATSMRCVSLAIACKTVTVSERTYNYNTSPPCADHERDHQNLKAINFKPESERPYKPSLGTLLYHRHRRFEDNVSGISNEDDSKENNLYIESEFVSDVLPGTHPPKDNNVMALNGNLLTSKQVVPSIILDMPLWGLLLVVQDNQYDLHSKVDSLAVYDILTNFEERWLRALKMHKLPKMKSSHDDSLLKIDRIPDIVGMDEVSCLMKINRRLGMFSEKISEGTKRSYKKGEVTLFSSEDFACYCEGKS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02308 413 CDD F-box_SF 21 59 - -
Rops10g02308 413 SUPERFAMILY HCP-like 83 149 - -
Rops10g02308 413 PANTHER MYND DOMAIN-CONTAINING 15 150 IPR044508 -
Rops10g02308 413 SUPERFAMILY F-box domain 16 75 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02308 Rops-Chr10 40862761 40872199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02308 310 368 Phospholipase D Gene Family (Wang group) AT4G11850 64.407 2.55e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02308 - - gmx:100798174 225.328