Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02304 ATGGACTACTATTTTGGAAACCCTAATTACGGTCAATCTGCCCTAAATATAGCTCCTTCTTCCTCTGATTTTGCTTTATCTGATTATCTCATGCTTGATGATGTTGTTGATCATCAAGAGTGTTGGTCACAAAGTACAGAAACCGAATCATCGGATAAAGCAGCCTCAAGTGATGCTAGTCATGGATTTGGTGATGCAGTCTCTACCAACGATAACATGAAATTCAAAAATGAGAATAAGCGAAACAAAGTAGAAGTGAGCACAAGGATCACGTTTAGAACAAGATCGCAAATTGAGATTATGGATGACGGATATAAATGGAGGAAGTACGGAAAGAAGTCAGTGAAGAACAATCCAAACCCTAGGAACTACTACAAGTGTTCATGTGAAGGGTGCAGTGTGAAGAAAAGGGTGGAAAGGGATAGGGATGACTCAAGCTATGTGTTAACAACTTATGAAGGTGTTCACAATCATGAGAGCCCGTGTACTGCCTACTATAGCCAAATGTCCTTGGTGCATTCTAATGATTGGATGCTGCAGACTTCTTCAAACTCATTATCCAATTCCTAG 570 0.4 MDYYFGNPNYGQSALNIAPSSSDFALSDYLMLDDVVDHQECWSQSTETESSDKAASSDASHGFGDAVSTNDNMKFKNENKRNKVEVSTRITFRTRSQIEIMDDGYKWRKYGKKSVKNNPNPRNYYKCSCEGCSVKKRVERDRDDSSYVLTTYEGVHNHESPCTAYYSQMSLVHSNDWMLQTSSNSLSNS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02304 189 Gene3D WRKY domain 88 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g02304 189 Pfam WRKY DNA -binding domain 102 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g02304 189 ProSiteProfiles WRKY domain profile. 96 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g02304 189 MobiDBLite consensus disorder prediction 42 80 - -
Rops10g02304 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 173 IPR044810 GO:0003700
Rops10g02304 189 SUPERFAMILY WRKY DNA-binding domain 93 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g02304 189 MobiDBLite consensus disorder prediction 42 73 - -
Rops10g02304 189 SMART WRKY_cls 101 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g02304 189 FunFam WRKY transcription factor 57 87 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02304 Rops-Chr10 40812372 40814128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02304 45 176 WRKY Transcription Factor Family AT5G64810 56.818 2.68e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops10g02304 WRKY 5.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02304 - - gmx:732584 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02304 10 40812372 40814128 Rops10g02304 10 40812372 40814128 ECH
Rops9g01892 9 34497410 34503706 Rops10g02304 10 40812372 40814128 PCT