Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02302 ATGGACTTGGCCGCGAAGCTCCGTCACTTGGACGTTACCGGCGCCGTTATTTTGGATGCACGAAAGCCCTCCATTCGCCGGCATCTTCCGCCACGCACGTTAGCTCAAACGGCCAGAGCGAACATCAACGGTAACGGTAACGGTAAATTGGTTTCCACCAATCGATTCTTAGGCCAAAAAAGGCCCAATTCTAGTTCCGTCGCTTCACCTCGTTTATCCGCTGTTGTCGTCGACGACGACACTCCGCTTACCGAAAACGACATCGAGTCTCTGTTTTCTGACCCTTCAGACGATAAACGACAAGTGAACAAGCGATCAAATACAGGCGCTTCGAGCGTTTCATCAGGTGTGAGGTTAGAAAACATAAGCAAAACCTATAAGGGTGTTACCGTGTTAAAGAATGTGACTTGGGAAGTGAAGAAGGGTGAGAAAGTGGGTTTGGTTGGTGTGAACGGTGCGGGTAAAACGACCCAGATGAGGATTATTGCGGGTCTGGAGGAACCCGATTCCGGTAACGTGATAAAGGCCAAACCCAACATGAAAATTGCGTTTTTGAACCAAGAGTTTGAGGTGTCACTTAGCAGGACGGTGAGGGAAGAGTTTATGAGTGCTTTCAAAGAGGAAATGGAGGTGGCAGCTAAATTGGAGAAGATTCAGAAGGCTCTAGAGGGTGCTGTTAATGATTTGGAATTAATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGAAAGGCACAATCTGTGAACTTGGATGAGGTTGATGCAAAGATAAGTAAATTGATGCCTGAACTTGGGTTTGCTCCAGAAGATTCTGATAGGTTGGTGGCTTCTTTTAGTGGTGGGTGGCAAATGAGGATGTGTCTGGGCAAGATTTTACTTCAGGAGCCAGATTTATTATTACTTGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGAGTATCTTAACCAGCAGGATGTGCCGATGGTTATCATTTCCCATGATCGAGCTTTTCTTGATCAACTGTGTACAAAAATTGTGGAAACTGACATGGGAGTATCCAGGACATATGAGGGAAACTATTCTCAGTTTTTGGTTTCAAGGGCAGCATGGTTTGAAGCACAGTATGCCGCATGGGAGAAGCAACAGAAAGAAATTGAACAGACAAAAGACTTGATAAATAGGTTAGGTGCCGGAGCAAATTCTGGCCGTGCTTCATCTGCAGAGAAGAAATTGGAGAGACTTCAGGAAGAGGAACTAGTAGAGAAGCCGTTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTGACAATTAATAACTTGCAATTTGGCTTTGAGGATGAGATGCTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGCACTTTACTGAAATTGATCATGGGTTTAGAGAAGCCAACTGGGGGTGAAGTGTTGCTTGGGGAGCATACTGTATTACCTAATTATTTCGAGCAAAATCAGGCTGAGGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATCAAAGGACTTCTTGGGCGTTGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATCAACGAGTACCAGGGCACTGTTATCACAGTATCTCATGATCGATACTTTATAAAGCAGATAGTTAATAGAGTGATAGAAGTTAAAGATGGCACTTTACAGGATTATGCAGGCGATTACAATTACTATTTAGAGAAGAATCTTGATGCTAGGGAAAGAGAGCTTGAACGCGAGGCAGAGCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAACAAAAGATGCAGGCCTTTCAAGCAGCAAAACAGAAGTCTAAAGGTGTGAAAAATTCGAAGAGATGGAAATGA 2136 0.4387 MDLAAKLRHLDVTGAVILDARKPSIRRHLPPRTLAQTARANINGNGNGKLVSTNRFLGQKRPNSSSVASPRLSAVVVDDDTPLTENDIESLFSDPSDDKRQVNKRSNTGASSVSSGVRLENISKTYKGVTVLKNVTWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVAAKLEKIQKALEGAVNDLELMGRLLDEFDLLQRKAQSVNLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYEGNYSQFLVSRAAWFEAQYAAWEKQQKEIEQTKDLINRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVTINNLQFGFEDEMLFNKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHTVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNSKRWK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02302 711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 659 IPR003439 GO:0005524
Rops10g02302 711 Coils Coil 671 700 - -
Rops10g02302 711 CDD ABCF_EF-3 117 347 - -
Rops10g02302 711 Gene3D - 406 672 IPR027417 -
Rops10g02302 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 649 IPR027417 -
Rops10g02302 711 ProSitePatterns ABC transporters family signature. 279 293 IPR017871 GO:0005524|GO:0016887
Rops10g02302 711 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 116 702 - -
Rops10g02302 711 Pfam ABC transporter 346 433 IPR032781 -
Rops10g02302 711 Gene3D - 114 399 IPR027417 -
Rops10g02302 711 MobiDBLite consensus disorder prediction 661 691 - -
Rops10g02302 711 SMART AAA_5 141 351 IPR003593 GO:0016887
Rops10g02302 711 SMART AAA_5 468 636 IPR003593 GO:0016887
Rops10g02302 711 MobiDBLite consensus disorder prediction 661 711 - -
Rops10g02302 711 FunFam ABC transporter ATP-binding protein 404 673 - -
Rops10g02302 711 Coils Coil 212 232 - -
Rops10g02302 711 MobiDBLite consensus disorder prediction 88 115 - -
Rops10g02302 711 CDD ABCF_EF-3 444 636 - -
Rops10g02302 711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 117 375 IPR003439 GO:0005524
Rops10g02302 711 ProSitePatterns ABC transporters family signature. 563 577 IPR017871 GO:0005524|GO:0016887
Rops10g02302 711 Pfam ABC transporter 460 591 IPR003439 GO:0005524
Rops10g02302 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 360 IPR027417 -
Rops10g02302 711 Pfam ABC transporter 132 307 IPR003439 GO:0005524
Rops10g02302 711 FunFam Putative ABC transporter ATP-binding component 118 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02302 Rops-Chr10 40788595 40793191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02302 441 661 Calmodulin-binding Proteins AT2G36910 24.696 1.07e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02302 - - gmx:100796907 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02302 10 40788595 40793191 Rops10g02302 10 40788595 40793191 ECH