Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02300 ATGGCGCCGAAGGAGAGAAGAGCGAGGGTAAGCAGAAACCCTGAATTGATCAGGGGAATTGGAAAATACTCGAGATCCCAGATGTACCACAAGAGGGGTCTCTGGGCAATTAAGGCTAAGAACGGCGGCGTTTTCCCTCGTCACGATCCCAAGCCTAAGCCTCAAGCTCCCCCTGAGAAGCCTCCCAAGTTCTACCCTGCTGAAGATGTCAAGAAGCCACTTGTCAACAAGCACAAGCCCAAACCCACTAAGCTCAGGGCTAGCATTACTCCTGGGACTGTTCTGATTCTTCTTGCAGGAAGATTTAAGGGAAAGAGAGTTGTGTTTTTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTAACTGGTCCTTTCAAGATCAATGGAGTTCCTTTGAGACGTGTGAATCAGTCATATGTTATTGGCACATCAACCAAAGTAGATGTTTCTGCAGTTAATGTGGATAAATTTGATGACAAGTACTTTTCAAAGGAAGCCCAGAAAAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGTCAGAGAAGGAGGAGAAAAATGTGCTCCCCCAGGAGAAGAAAGATGACCAAAAATCTGTCGATTCTGCTTTGATAAAAGCTATCGAAAGTGTCCCAGACTTGAAGGCTTACCTAGGTGCTAGGTTTTCTTTGAAGGCAGGCGTGAAGCCTCACGAGCTAGTCTTCTAA 702 0.4601 MAPKERRARVSRNPELIRGIGKYSRSQMYHKRGLWAIKAKNGGVFPRHDPKPKPQAPPEKPPKFYPAEDVKKPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFESEKEEKNVLPQEKKDDQKSVDSALIKAIESVPDLKAYLGARFSLKAGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02300 233 MobiDBLite consensus disorder prediction 172 197 - -
Rops10g02300 233 CDD KOW_RPL6 81 233 IPR041997 -
Rops10g02300 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Rops10g02300 233 MobiDBLite consensus disorder prediction 40 68 - -
Rops10g02300 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Rops10g02300 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Rops10g02300 233 FunFam 60S ribosomal protein L6 87 171 - -
Rops10g02300 233 PANTHER 60S RIBOSOMAL PROTEIN L6 6 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Rops10g02300 233 Gene3D - 87 171 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02300 Rops-Chr10 40747736 40749497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02300 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.974 9.42e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02300 K02934 - pvy:116113922 395.201