Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02279 ATGTCCAGAGAAAGGGAGAGGTTTGATGAGATAGGCAAGAAGATCAAGAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACATATGTTGGGTCCTCCTGGAACCCTAAATACCATTACCCCTTGTGCAGCATGTAAGCTTTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATTTTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTAATGGAGGTACCAGAGTGTCAGAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTGAGGCTCAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTAAGAGCTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCTCCTCATGTTGCTATGCTCCCTTCTTCTGGGGCTGTGTCAATTGCTGCTCCACCACCTCCACCTCCACCTCCACCACCACCACCACCTCGTCCTCCTCTTCCTCCAACTTCTTCCATCTACATCCAACAGAGGGATCCCACCAATTATAGCAGAATTTCAAGTGATAATATTTCCTATTTTGGTTAA 651 0.4485 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPFFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREANMIPSPHVAMLPSSGAVSIAAPPPPPPPPPPPPPRPPLPPTSSIYIQQRDPTNYSRISSDNISYFG* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02279 216 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Rops10g02279 216 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Rops10g02279 216 MobiDBLite consensus disorder prediction 165 216 - -
Rops10g02279 216 MobiDBLite consensus disorder prediction 192 216 - -
Rops10g02279 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 172 - -
Rops10g02279 216 MobiDBLite consensus disorder prediction 168 191 - -
Rops10g02279 216 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02279 Rops-Chr10 40492224 40493923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02279 27 216 AS2 family AT2G40470 73.096 1.23e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops10g02279 LOB 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02279 - - gmx:100786324 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02279 10 40492224 40493923 Rops10g02279 10 40492224 40493923 ECH
Rops11g03855 11 72448326 72452976 Rops10g02279 10 40492224 40493923 ECH