Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02273 ATGGGAAGTGTTAGTAACATTGGCTTCCCTTCGACATTCACAGCTCCATTGGACACGCAAGTGCTTTCAAAGCAGAGGAACCACAAATCGCCATGCTGTTTCACGGTTCCTCGTTACTACTCTGTTAGGCAGAGTCGAATCTGTTGTAAACTATCAGAGAGTGGGATCGAGGAGAACCCCACGAGCAAGAGGAGGGCCTCTAAATCAAAGGACAGGATGGAGGAATACAATATAGCTATGAAGGGGATGATGAGGAATCCTTACGAGTATCACCACGATCTGGGTATGAATTACACACTTATAACTGACCATTTGATTGTGGGCTCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGCAGGAAGATGTGGCATACATTTTAAACTTGCAACAGGATAAGGATGTTGAATATTGGGGAGTAGACTTGAAGTCAGTAATAAAAAGGTGTCGTGAACTTGAAATCAGACACATGAGGAGGCCGGCACAAGACTTTGATCCAAACTCCTTGCGAAATGAACTACCTAAAGCAGTCTCATCATTGGAATGGGCAATTTCCGAGGGAAAAGGAAGAGTTTATGTGCATTGCACTGCTGGACTTGGAAGAGCTCCGGCAGTTGCCATTGCTTATTTGTTCTGGTTCTGTGACATGAATCTAAATACAGCTTATGACATGCTAACTTCAAAGAGACCTTGTGGACCGAATAAAAGAGCTATAAGCGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGAATATGCTTTTGAGGATATAGCAGACTGGGAGAGGAATTTGATTCAAGATCGTGTCCGTTCCCTTCGTGGAACTTGA 864 0.4375 MGSVSNIGFPSTFTAPLDTQVLSKQRNHKSPCCFTVPRYYSVRQSRICCKLSESGIEENPTSKRRASKSKDRMEEYNIAMKGMMRNPYEYHHDLGMNYTLITDHLIVGSQPQKPEDIDHLKKQEDVAYILNLQQDKDVEYWGVDLKSVIKRCRELEIRHMRRPAQDFDPNSLRNELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNTAYDMLTSKRPCGPNKRAISGATYDLAKNDPWKEPFESLPEYAFEDIADWERNLIQDRVRSLRGT* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02273 287 Gene3D Protein tyrosine phosphatase superfamily 81 287 IPR029021 -
Rops10g02273 287 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 238 IPR029021 -
Rops10g02273 287 Pfam Dual specificity phosphatase, catalytic domain 118 236 IPR000340 GO:0008138|GO:0016311
Rops10g02273 287 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 80 287 - -
Rops10g02273 287 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 233 IPR000387 GO:0016311|GO:0016791
Rops10g02273 287 SMART dsp_5 97 241 IPR020422 GO:0006470|GO:0008138
Rops10g02273 287 CDD DSP_laforin-like 96 241 IPR045204 GO:0019203
Rops10g02273 287 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 16 255 - -
Rops10g02273 287 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02273 Rops-Chr10 40361024 40364456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02273 25 287 Protein tyrosine phosphatase (PTP) family AT3G10940 71.004 9.95e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02273 - - gmx:100787079 500.36