Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02268 ATGGCTGTCCGAGCCCTAATGAGCAGAAAAACCTTAGCCTCTGTGCTCCGCAATAATCCAAAACCTATTATCGGAGTGGGTATAGCACGTGGCTTGCATTCCTTCACGCTACCCGATCTCCATTACGACTATGGCGCCTTGGAACCTGTCATCAGCGGCGAAATCATGCAACTCCACCATCAGAAGCACCATCAGACTTACGTCACCAACTACAATAAGGCTCTTGAGCAGCTTCAAGATGCCATCGCCAAGGCTGATTCCCCTGCCATCGTTAAGCTCCAGAGTGCCATCAAGTTCAATGGCGGAGGTCATATCAACCATTCTATTTTCTGGAAAAATCTAACCCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCCCTGGGATGGGCCATTGACACCCATTTTGGTTCTTTAGAAGCATTGATACAAGAGGTTAATGCAGAAGGTGCGGCCCTACAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGGCTTGTAGTTGAAACCACTGCAAACCAGGACCCACTAGTTACTAAGGGACCAAATTTAGTTCCAATTCTTGGTATAGATGTTTGGGAACATGCATACTACTTACAGTACAAGAATGTCAAGCCAGACTACTTGAAGAACATTTGGAAAGTTATTAACTGGAAATATGCCGGTGAAGTTCGCTTCAACCTGTGCCATATAAAAACCCTAGTGCCGTCTTCATCTTCTGCCTCAGCAGCTGCAAGAACCCTAACCCTAGAGAGCGCAACACCTTCGATAACCATGACTTTCAAGCGCAGGAATGGAGGTCGCAACAAGCATGGTCGTGGCCATGTCAAATTCATTCGATGCTCCAACTGTGGCAAATGTTGCCCTAAGGACAAGGCAATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCTGTTAGAGATGTTCAGGAGGCTTGTGTCTATGAACAATACACTCTTCCTAAGCTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCTCGCACTGATAGGAGGAAGCGTGACCCACCACAGCGCTTCATCAGGCGCAGGGATGATGCACCAAGGCCCGGTCAACCTGGTCAAGCACCTCGTCCTGCTGGAGTAGGAGCTCCTGCCCGTACCTAA 1179 0.486 MAVRALMSRKTLASVLRNNPKPIIGVGIARGLHSFTLPDLHYDYGALEPVISGEIMQLHHQKHHQTYVTNYNKALEQLQDAIAKADSPAIVKLQSAIKFNGGGHINHSIFWKNLTPVREGGGEPPKGSLGWAIDTHFGSLEALIQEVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKGPNLVPILGIDVWEHAYYLQYKNVKPDYLKNIWKVINWKYAGEVRFNLCHIKTLVPSSSSASAAARTLTLESATPSITMTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRPAGVGAPART* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02268 392 FunFam Superoxide dismutase 116 233 - -
Rops10g02268 392 MobiDBLite consensus disorder prediction 353 373 - -
Rops10g02268 392 Pfam Iron/manganese superoxide dismutases, C-terminal domain 125 226 IPR019832 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 ProSitePatterns Manganese and iron superoxide dismutases signature. 196 203 IPR019833 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 MobiDBLite consensus disorder prediction 350 392 - -
Rops10g02268 392 ProSitePatterns Ribosomal protein S26e signature. 336 343 IPR000892 GO:0003735|GO:0005840|GO:0006412
Rops10g02268 392 Gene3D - 116 232 IPR036314 -
Rops10g02268 392 Gene3D Ribosomal protein S26e 264 377 IPR038551 -
Rops10g02268 392 FunFam 40S ribosomal protein S26 264 377 - -
Rops10g02268 392 Pfam Ribosomal protein S26e 264 368 IPR000892 GO:0003735|GO:0005840|GO:0006412
Rops10g02268 392 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 120 232 IPR036314 -
Rops10g02268 392 Gene3D Fe,Mn superoxide dismutase (SOD) domain 52 115 IPR036324 -
Rops10g02268 392 PANTHER SUPEROXIDE DISMUTASE 2 30 230 - -
Rops10g02268 392 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 33 116 IPR036324 -
Rops10g02268 392 PRINTS Manganese superoxide dismutase signature 38 49 IPR001189 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 PRINTS Manganese superoxide dismutase signature 59 72 IPR001189 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 PRINTS Manganese superoxide dismutase signature 154 162 IPR001189 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 PRINTS Manganese superoxide dismutase signature 98 111 IPR001189 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 PRINTS Manganese superoxide dismutase signature 194 206 IPR001189 GO:0004784|GO:0006801|GO:0046872
Rops10g02268 392 FunFam Superoxide dismutase 52 115 - -
Rops10g02268 392 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 34 114 IPR019831 GO:0004784|GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02268 Rops-Chr10 40311851 40332546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02268 264 379 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.483 3.66e-68 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02268 K04564 - gmx:100785490 429.098