Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02259 ATGGCAATTGCAGCAACCTCTTTCATCTCACTTCTTTTCTTTCTTCTTAACCTATGCCTTCATGGCACTTATGGCGACTATGGAGGAGGATGGCAAACTGCTCATGCCACATTTTATGGTGGTGGAGATGCATCAGGCACAATGGGAGGAATCAGGTTCACCATCAATGGCCACTCTTACTTTAACTTGGTTCTTATCACAAATGTTGGTGGAGCTGGAGATGTTCATTCTGCGTCCATCAAGGGATCAAGGACTGGGTGGCAAACCATGTCTAGGAACTGGGGACAGAATTGGCAAAGCAACTCTTACCTCAATGGCCAAAGCCTCTCTTTTCAGGTCACTACAAGTGATGGCAGGACTATCACTAGCAACAACGTTGTACCTGCTAATTGGCAATTTGGACAGACATTTGAGGGGGGACAGTTTTAG 429 0.4592 MAIAATSFISLLFFLLNLCLHGTYGDYGGGWQTAHATFYGGGDASGTMGGIRFTINGHSYFNLVLITNVGGAGDVHSASIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSNNVVPANWQFGQTFEGGQF* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02259 142 Gene3D - 50 142 IPR036749 -
Rops10g02259 142 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 60 139 IPR007117 -
Rops10g02259 142 PRINTS Expansin signature 61 82 IPR002963 GO:0009664
Rops10g02259 142 PRINTS Expansin signature 125 141 IPR002963 GO:0009664
Rops10g02259 142 PRINTS Expansin signature 49 61 IPR002963 GO:0009664
Rops10g02259 142 PRINTS Expansin signature 1 8 IPR002963 GO:0009664
Rops10g02259 142 PRINTS Expansin signature 96 117 IPR002963 GO:0009664
Rops10g02259 142 Pfam Expansin C-terminal domain 51 128 IPR007117 -
Rops10g02259 142 SUPERFAMILY PHL pollen allergen 49 139 IPR036749 -
Rops10g02259 142 PANTHER EXPANSIN-A15 11 50 IPR002963 GO:0009664
Rops10g02259 142 FunFam Expansin 50 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02259 Rops-Chr10 40195928 40197405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02259 27 50 Expansin Gene Family AT1G26770 91.667 1.35e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02259 - K20628 gmx:100807183 174.481