Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02258 ATGTCGTTTCCGTACCACCGTCGATCTCAATCGGAGGTACATTTTCGGATCCCCGAAGACTTCGACCTCGATCTCGAAATGGATCCATTCGACATTCCTCCACTCCAATTCCAAGATCCGGCCCTACAAGCTGAATCCGGATCCAAACTCCAATCCCCGCCCCTTCCACCCTCCAAATCCGGAAATGCAGAGAGTAGCAATAGCAAAACCGGGAGACCCGGTCACCGGCGAAGCAATTCCGCCGACGGTTCTTCTTCCTCATTATCGGAAGGCATCGAGGCTAAGAAAGCCATGTCCCCTGATAAACTAGCTGAATTGTGGACCGTTGATCCCAAAAGAGCCAAGAGGATTCTGGCCAATCGTCAATCTGCGGCGCGCTCCAAAGAGAGGAAAGCGTGTTATGTGGTGGAGCTTGAAAGAAAAATTCAATGTCTTCAAACTGAAGCAACTACTCTTTCTGCTCAATTGGGTCTTTTCCAGAGAGATACGACCGGTCTGACTTCTGAAAATACGGAGTTGAAGCTTCGGTTACAAGGCATGGAGCAACAAGCTAAGTTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAAGATTGCTACTGGAGAGATGGTAACTAATGCTGATAACTATGGTTTGGGAATGTATCAACTTTCATATTCTCAAGCTTCACTCTTCTCACATCAGCCACAACATGGGCCTAGCGAACTTCAGGCCATGCAAATAATGCAATTTCCTTCACTCTCATCTAATGTATCTACTTCCCATCAGCCTCTGTTTGATCTAGCCACTCCTTATGATTTGTCAGATGTGTTGTCAAGTGATTCTGTCGGCCAATTTCAGGGGCTCGACATAGGCCACAGGGTTTCTCATGTTCTGACGCCAGATGCTTCCTCCATTTCTGTTAATAAATTCAAGAATGCCTTTTGA 942 0.4639 MSFPYHRRSQSEVHFRIPEDFDLDLEMDPFDIPPLQFQDPALQAESGSKLQSPPLPPSKSGNAESSNSKTGRPGHRRSNSADGSSSSLSEGIEAKKAMSPDKLAELWTVDPKRAKRILANRQSAARSKERKACYVVELERKIQCLQTEATTLSAQLGLFQRDTTGLTSENTELKLRLQGMEQQAKLCDALNEALKKEVDRLKIATGEMVTNADNYGLGMYQLSYSQASLFSHQPQHGPSELQAMQIMQFPSLSSNVSTSHQPLFDLATPYDLSDVLSSDSVGQFQGLDIGHRVSHVLTPDASSISVNKFKNAF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02258 313 SMART brlzneu 108 172 IPR004827 GO:0003700|GO:0006355
Rops10g02258 313 Pfam bZIP transcription factor 112 170 IPR004827 GO:0003700|GO:0006355
Rops10g02258 313 Coils Coil 135 155 - -
Rops10g02258 313 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 110 173 IPR004827 GO:0003700|GO:0006355
Rops10g02258 313 FunFam probable transcription factor PosF21 111 164 - -
Rops10g02258 313 MobiDBLite consensus disorder prediction 41 92 - -
Rops10g02258 313 Gene3D - 111 177 - -
Rops10g02258 313 SUPERFAMILY Leucine zipper domain 112 166 IPR046347 GO:0003700|GO:0006355
Rops10g02258 313 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 5 245 - -
Rops10g02258 313 MobiDBLite consensus disorder prediction 25 97 - -
Rops10g02258 313 Coils Coil 177 197 - -
Rops10g02258 313 CDD bZIP_plant_RF2 113 162 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02258 Rops-Chr10 40184597 40187616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02258 4 289 bZIP Transcription Factor Family AT2G40620 52.336 2.81e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops10g02258 bZIP_1 3.7e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02258 - - aprc:113852914 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02258 10 40184597 40187616 Rops10g02258 10 40184597 40187616 ECH