Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02257 ATGGCTCTTTATCACCGTCCCCACCGTCTCTTGCTTAGCACAGATTCAAGCTCAATTGCATCAGCTTTGCTTTGTGCACTTATATGTGCTCTGGGACTCAATTCAATTGTACGCTGTGCATTAAGATGTAGCCGCAGGTTTGCTTTGGAGACCCCAGATGAGGCTGCAGCTCGTTTAGCTGGAAAAGGCTTAAAGAAGAGGGCATTGCATCAGATCCCTATAGCTGTTTATGGTTCAGGTACTACTAGTGTTGCAGCCACAGATTGTCCAATTTGCCTTGGGGACTTTATAGATGGGGAGAAAGTTAGAGTACTACCAAAATGCAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTGCTCTCACATTCTTCTTGTCCTATTTGCAGACAGTCTTTGCTTGAGCATCCAACCACTTCTGAAGCTTCAACCAGATCTGTATCTGTAGCTGCAGCTGCAGGAACCACACACCATGTAGAGAATGCCTTAGGAGGACATGAACATGGGCCTTCAGCAGTAGCTGTGGAAGAGGTTGGCTAA 543 0.4622 MALYHRPHRLLLSTDSSSIASALLCALICALGLNSIVRCALRCSRRFALETPDEAAARLAGKGLKKRALHQIPIAVYGSGTTSVAATDCPICLGDFIDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPICRQSLLEHPTTSEASTRSVSVAAAAGTTHHVENALGGHEHGPSAVAVEEVG* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02257 180 CDD RING-H2_EL5-like 88 131 - -
Rops10g02257 180 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Rops10g02257 180 PANTHER RING-H2 FINGER PROTEIN ATL78 20 149 IPR044602 GO:0016567|GO:0016740
Rops10g02257 180 Pfam Ring finger domain 88 131 IPR001841 -
Rops10g02257 180 FunFam RING-H2 finger protein ATL72-like 55 135 - -
Rops10g02257 180 SUPERFAMILY RING/U-box 88 138 - -
Rops10g02257 180 SMART ring_2 89 130 IPR001841 -
Rops10g02257 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02257 Rops-Chr10 40167089 40169182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02257 12 147 C3H Transcription Factor Family AT3G10910 60.690 2.06e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02257 - K19040 gmx:100787273 250.366