Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02253 ATGTCCTCCGAAGACATGGGTCTCGTTCCTAACCAGCGAATCGATAACGGTCTCACCTCACCCCTCGTCTTCCAAGACGACTCTTTGCGTTTCAACTGCGCTACCCAACAGCGCCGGGTCGATGACCCGGGTCCGAAAACCCGTGAGCTCGGTGGTTTCATCGACGACAAGATGTTCACCATCGACCGCAACCGCAACCGCTTTTTCACCGCCCAGGGCACGGAGTTCCGCCGGAACGTTTATGGCGATTGCTCCGGCCACCGGGACTCTTCCGATACTCGGAATTGGAACGGCAACGGGAGCGCCGCAACTCCCAGCGGCGATGAATCGGACGACGAGGACGATGATGAAGATGATGACGACGAAGACGACGACGTCGAAGGCGATGCTGAAGTAGAAGGACTCGTTGCTGTTGGTGATGGGAGCAAGCGAAATTCCAATGCAATCAATGAAGTGAACAGAAACAACGGTAATGGTGGTGGTAATTTACCTGGTGTTGCTAATGGGAAAGCCCAACATCATTCCCCTTATGTTTCTAGTAGAGAACTATTGGGGAAGGATGGTGATCTTGGGCAGTTGGTGCATAATAATGCGAGTGGTGCTGATGAAGATCATCAGCGAGAAAGATTAGGGAAATCTCAGAATGCTGTCACCATTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGCACAGAAGGGTCAGCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTCATATATTCAAGTGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTCACGGGAGCTCTTATGGATGATGCAATGATATTACCTTGTGGGCATTCATTCGGTGGAGGTGGAATACAGCATGTTAATAGAATGAAAGCTTGCTGCACTTGTTCTCAATCGACTTCTGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTCCAGGCATATCGTCGGGAAGAAGAGTCACAATTTTACCGGTCATCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTTGGAGATTCAGTTGTTATGGAGCCACCACGGAGTAGAGGTGTTCAATTTCCATTTGCTGTGATGGACAGGGTTATCATAAAGGGGAACAAAAGGACACCACAACGATTTGTTGGGCGCGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTACGTGGTGAAGACATTGGACAATGCAGAGAGTGTGAAATTGCAGTATCGCTCCCTTGCCAAGGTTCTGGATGATCCTTCAAAACCTGCCTCCAGCAAGATGGGACCTAACTGGCTTTAG 1344 0.4866 MSSEDMGLVPNQRIDNGLTSPLVFQDDSLRFNCATQQRRVDDPGPKTRELGGFIDDKMFTIDRNRNRFFTAQGTEFRRNVYGDCSGHRDSSDTRNWNGNGSAATPSGDESDDEDDDEDDDDEDDDVEGDAEVEGLVAVGDGSKRNSNAINEVNRNNGNGGGNLPGVANGKAQHHSPYVSSRELLGKDGDLGQLVHNNASGADEDHQRERLGKSQNAVTIAETDCEEYYSHYLQGTEGSASVQKVMVDDNGCGFSGRKDVIYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIQHVNRMKACCTCSQSTSEESISPNLSLRAAVQAYRREEESQFYRSSKRRRERFDQGGFGDSVVMEPPRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPASSKMGPNWL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02253 447 MobiDBLite consensus disorder prediction 80 173 - -
Rops10g02253 447 MobiDBLite consensus disorder prediction 91 106 - -
Rops10g02253 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 338 IPR013083 -
Rops10g02253 447 MobiDBLite consensus disorder prediction 107 131 - -
Rops10g02253 447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 442 - -
Rops10g02253 447 MobiDBLite consensus disorder prediction 143 162 - -
Rops10g02253 447 SUPERFAMILY RING/U-box 267 339 - -
Rops10g02253 447 ProSiteProfiles U-box domain profile. 268 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02253 Rops-Chr10 40118399 40123017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02253 213 447 Plant U-box Gene Family AT5G05230 60.744 2.09e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02253 - - pcin:129302449 603.594