Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02252 ATGTTGAAGATTGTTGACTACTTTGTTACGAGGAGGCCATGGCTTAATCTTTATGGAGTTAATGTGAGACCAGTTGCGTCATTTGGAAGGAGGTTCGCATGCTACTTTTGCAAGAGAGAGTTATCTTCCTCACAAGCCTTGGGAGGACACCAAAACGCACATAAACAAGAACGTGCCCTGATGAAAAAACTTCATCAAGACCTTAACGCCAGTATTCTTGGGTTACCCTGCTTCCCTTATTATCCTTATCCTACGATTTCCACTCATTCCTTTCATGGAAGACACTTTAATGGGGCACTTGATTCCAAGCCAATGGTATGGTCATATGGATTTAGGTATGGTCATCCTTGGTCAAGGCAGTGTCAGGGGATGCCGAGAAGTGATCCAACTCCAAGTTCAAATTCAAAACCAGAGGATGGTAATGCCAGTGTTGAAACACTCTTTTCTCAAATACTGCCACCAAATCACCAAAACAAGTCATAA 483 0.4265 MLKIVDYFVTRRPWLNLYGVNVRPVASFGRRFACYFCKRELSSSQALGGHQNAHKQERALMKKLHQDLNASILGLPCFPYYPYPTISTHSFHGRHFNGALDSKPMVWSYGFRYGHPWSRQCQGMPRSDPTPSSNSKPEDGNASVETLFSQILPPNHQNKS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02252 160 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Rops10g02252 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Rops10g02252 160 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 100 IPR044246 GO:0009788
Rops10g02252 160 MobiDBLite consensus disorder prediction 123 160 - -
Rops10g02252 160 MobiDBLite consensus disorder prediction 120 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02252 Rops-Chr10 40109662 40110269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02252 29 82 C2H2 Transcription Factor Family AT5G01860 53.704 1.00e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02252 - - aprc:113850616 95.5153