Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02249 ATGCGAGTGTTTTCCAACATGAGAGGTGTTCTTTTGTGCTTGTTCTCGGTGCTTACAGTGGCGGTGGCTGCAGTGAACCCGTCTCTGAACGACGACGTTCTGGGGTTGATTGTGTTCAAAGCTGACATACAAGATCCGAAGGGAAAGTTGGCATCTTGGAACGAAGATGATGAGAGTGCTTGTGGGGGTAGTTGGGTGGGTGTGAAATGCAACCCTAGATCCAGCCGAGTGGTAGAGCTTAACCTTGATGGGTTCTCTCTCTCTGGAAGAATAGGTCGAGGCCTTCAAAGGTTGCAATTTCTGCGTAAGCTTTCTCTGGCGCACAACAACCTCACTGGTGGCATAAGCCCCAACATTGCTCGTATAGATAACCTTAGAGTCCTTGACTTGAGCGACAACAATCTCTCAGGGGAGTTACCTGATGATTTTTTCCGACAATGTGGGTCTCTCAGAACTGTTTCTTTGGCCAGGAACAAGTTTTCTGGGAGCATTCCTTCTAGTTTGGGTTCTTGTTCAACTCTTGCTTCTATTGACTTCTCTTTTAACCAGTTTTCTGGTTCTGTTCCTCCTTTAGTTTGGACTTTGAGTGGACTCAGGTCTCTGGATTTGTCTGATAACTTGTTGGAGGGTGAGATTCCTAAAGGGGTTGAGGCTTTGAAGAATTTGAGGAGCATTAGCTTGGCAAGAAATCAGTTTTCTGGGGAGATTCCAGAAGGGTTTGGAAGTTGCTTGCTTTTGAGGTCCATTGATTTCAGTGAGAATTCTCTCTCTGGTAGCATTCCTGGTGATTTGAAGGAACTAGCTTTGTGTAGTTACTTTAGTTTGAGTGGAAACGCTTTCTCAGGGGACATTCCTGAGTGGATCGGAGAGATGAAGGGCCTTGAGACTTTGGACCTCTCACGGAATAGATTTTCTGGTCAGATGCCAAAATCTGTAGGAAATCTCCAGTCATTGAAGATGTTGAATTTTTCTGCAAATGGTTTCACCGGTAATCTGCCAGAATCTATGGTGAATTGCACAAACCTTTTGGCCTTGGATGTCAGCCGAAACTCAATGTCTGGAGGTCTTCCGTCTTGGATTTTCAAGTCAGATTTGGTATCAGAAAACAGAATGAGTGGTGGCATGAAAAGCCCTTTGAATTCCTTGGCTGAAGTTGCGGTTCAAAGTCTTCAAGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACCTCTGCTATTGCAGGTTTAAGCAGCTTGCGGTTTTTGAATTTATCAAGTAACTCTCTTAGAGGTCCTATACCAGCTGCAATTGGTGAATTAAAAACATGTTCTAGTCTTGATTTGAGTTTTAATAAGCTGAATGGAAGCATACCGTGGGAAATAGGAGGAGCTATGTCCTTGAAAGAACTAATATTGGAAAAGAACTTCCTAATCGGGAAAATTCCATCCTCAATTGAGAACTGTTCTTCGTTAACGACTTTGATTCTGTCCCAGAACAGGCTGAGTGGGCCGATTCCTGCTGCAGTTGCAAAACTTACCAACCTGCAAACTGTAGACTTGTCATCTAACAACCTTACTGGAAACCTTCCCAGGCAATTGGCCAACCTTCCAAATATTGTTTCCTTCAATATATCTCACAACAACCTTCAGGGTGAACTGCCAGCTGGTGGTTTTTTCAACACCATTTCACCTTCCTCTGTTTCTGGCAATCCATCTCTATGTGGCGCTGCAGTGAACAAATCATGCCCTGCTGTTCTCCCAAAGCCTATTGTTTTGAATCCCAACACTACTACTACTGACTCTGGCCCAGGTTCACTGCCTCCAAATCTGGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGAGTCATTGGCATTACTGTTCTCAATCTCCGTGTTCGGTCCACCACATCTCCATCTGCAGCTGTTCTCACATTTTCTGCAGGGGATGAATTCAGCCATTCCCCAACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGAGCACATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGGTTTGGGGCTGTGTACCAAACAGTTCTCAGTGATGGGCGTTCAGTTGCTATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCACAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTTGTGGAACTTGAAGGTTATTATTGGACTCCATCACTACAGCTTCTCATATACGAGTATGTCTCTGGTGGTAGTCTGTATAAGCATCTCCATGATGGATCGGGTGGAAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTCGGGACAGCAAAGGCCTTGGCTCACTTGCACCACTCAAACCTTATTCACTATAACATTAAATCAACCAATGTACTTATTGATAGTTATGGTGAGCCTAAAGTAGGGGATTTTGGGCTCGCAAGGCTGCTACCAATGCTTGATCGTTACATTTTGAGCAGCAAAATTCAGAGTGCACTTGGCTACATGGCACCAGAGTTTGCCTGCAAAACTGTGAAAATCACTGAGAAATGTGATGTTTATGGGTTTGGAGTTTTGGTATTGGAGATAGTGACAGGGAAGAGGCCTGTAGAGTATATGGAGGATGATGTGGTGGTACTATGTGACATGGTGAGAGGAGCATTGGAAGAAGGGAGGGTGGAGGAATGTGTTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGCTATTCCTGTGATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGCCCCTCAGAAGGACAGGAGGAGTTGGTATGA 2919 0.443 MRVFSNMRGVLLCLFSVLTVAVAAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGSWVGVKCNPRSSRVVELNLDGFSLSGRIGRGLQRLQFLRKLSLAHNNLTGGISPNIARIDNLRVLDLSDNNLSGELPDDFFRQCGSLRTVSLARNKFSGSIPSSLGSCSTLASIDFSFNQFSGSVPPLVWTLSGLRSLDLSDNLLEGEIPKGVEALKNLRSISLARNQFSGEIPEGFGSCLLLRSIDFSENSLSGSIPGDLKELALCSYFSLSGNAFSGDIPEWIGEMKGLETLDLSRNRFSGQMPKSVGNLQSLKMLNFSANGFTGNLPESMVNCTNLLALDVSRNSMSGGLPSWIFKSDLVSENRMSGGMKSPLNSLAEVAVQSLQVLDLSHNAFSGEITSAIAGLSSLRFLNLSSNSLRGPIPAAIGELKTCSSLDLSFNKLNGSIPWEIGGAMSLKELILEKNFLIGKIPSSIENCSSLTTLILSQNRLSGPIPAAVAKLTNLQTVDLSSNNLTGNLPRQLANLPNIVSFNISHNNLQGELPAGGFFNTISPSSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTTTTDSGPGSLPPNLGHKRIILSISALIAIGAAAVIVIGVIGITVLNLRVRSTTSPSAAVLTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLSDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHDGSGGNFLSWNERFNVILGTAKALAHLHHSNLIHYNIKSTNVLIDSYGEPKVGDFGLARLLPMLDRYILSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECVDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELV* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02249 972 SMART LRR_typ_2 507 530 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 531 555 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 291 315 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 122 146 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 219 243 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 411 435 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 195 218 IPR003591 -
Rops10g02249 972 SMART LRR_typ_2 387 410 IPR003591 -
Rops10g02249 972 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 683 765 - -
Rops10g02249 972 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Rops10g02249 972 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 766 967 - -
Rops10g02249 972 Pfam Protein tyrosine and serine/threonine kinase 691 957 IPR001245 GO:0004672|GO:0006468
Rops10g02249 972 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Rops10g02249 972 Gene3D Transferase(Phosphotransferase) domain 1 766 970 - -
Rops10g02249 972 SUPERFAMILY Protein kinase-like (PK-like) 693 957 IPR011009 -
Rops10g02249 972 PRINTS Leucine-rich repeat signature 125 138 - -
Rops10g02249 972 PRINTS Leucine-rich repeat signature 507 520 - -
Rops10g02249 972 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 311 581 - -
Rops10g02249 972 Gene3D Ribonuclease Inhibitor 365 580 IPR032675 -
Rops10g02249 972 Gene3D Ribonuclease Inhibitor 30 194 IPR032675 -
Rops10g02249 972 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515
Rops10g02249 972 Pfam Leucine Rich Repeat 461 483 IPR001611 GO:0005515
Rops10g02249 972 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Rops10g02249 972 ProSiteProfiles Protein kinase domain profile. 689 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02249 972 CDD STKc_IRAK 695 961 - -
Rops10g02249 972 SUPERFAMILY L domain-like 58 360 - -
Rops10g02249 972 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 30 310 - -
Rops10g02249 972 Pfam Leucine rich repeat 293 351 IPR001611 GO:0005515
Rops10g02249 972 Pfam Leucine rich repeat 485 544 IPR001611 GO:0005515
Rops10g02249 972 Pfam Leucine rich repeat 387 424 IPR001611 GO:0005515
Rops10g02249 972 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515
Rops10g02249 972 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 194 959 - -
Rops10g02249 972 Gene3D Ribonuclease Inhibitor 266 364 IPR032675 -
Rops10g02249 972 SUPERFAMILY RNI-like 270 559 - -
Rops10g02249 972 Gene3D Phosphorylase Kinase; domain 1 683 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02249 Rops-Chr10 40035973 40040570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02249 14 971 Receptor kinase-like Gene Family AT3G56370 68.290 0.0 1278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Rops10g02249 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02249 - - gmx:100791629 1634.39