Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02246 ATGACTTCTGGGTCTGCAAGTTCTTCTTCTTGGTCATCTTCAAATTGGGTCATGGAAAGTGGGAATGTTCCTCATGTTTTGGCAGTTGATGATAACCTCATTGATCGCAAACTTGTTGAGAAACTGCTTAGGAACTCCTCTTGCAAAGTGACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTGACAAGTGGTGAACAGAACACATTGAATGGTAAATCCAAAGTAAATTTGGTCATCACTGATTATTGTATGCCAGGGATGACAGGCTACGAGCTACTAAAGAAAATCAAGGAATCATCTGCAATGAAGGAGGTTCCGGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCTTAAAGCCCCTCAAACAATCTGATGTAAAAAAACTGACATGTCAATTAATGAATAGGGAAGGTGACATTTAA 477 0.4088 MTSGSASSSSWSSSNWVMESGNVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGKSKVNLVITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVKKLTCQLMNREGDI* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02246 158 FunFam Two-component response regulator ORR5 24 154 - -
Rops10g02246 158 Pfam Response regulator receiver domain 26 146 IPR001789 GO:0000160
Rops10g02246 158 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 152 IPR045279 GO:0009736
Rops10g02246 158 CDD REC_typeA_ARR 26 147 - -
Rops10g02246 158 Gene3D - 25 157 - -
Rops10g02246 158 ProSiteProfiles Response regulatory domain profile. 25 152 IPR001789 GO:0000160
Rops10g02246 158 SUPERFAMILY CheY-like 24 153 IPR011006 -
Rops10g02246 158 SMART REC_2 24 148 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02246 Rops-Chr10 40001492 40003167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02246 4 153 Response Regulator Gene Family AT3G56380 68.421 8.54e-66 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops10g02246 Response_reg 3.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02246 K14492 - gmx:100778707 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01427 9 23513324 23514346 Rops10g02246 10 40001492 40003167 PCT