Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02239 ATGATCTCAGGGGTTATATGTGACACGCGGTGGTTGGGTTGGATTTCTTCTCTTCCTTTCACAGCCGCAGCCGCAGGAGACAATAGGGCACCATTCTGGTGGAGGAAGTGCTCCACCGATGGCCAACATGAAGAAAGTCGATGTCTTGATGCACTCGAGCAGCTCAAGAAATTCCCCGTCAATTACAAGATTCTCGTCAACACCCAGGTTGGCAAACATCTAAAAGTTCTCACTAAGCACCCAAGGCAGAAAATTCGGGCCTTTGCTATTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAGTGGGGGCACTGATAATAAGGTTGAGTCAGCAAATGGGGAGAGAGCTGGGAAGATGCAGAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAACTGTCAAGGTTGAGAAAATGGATAGGAATGGTACATCTAAGTCAAGTTCAGAAAATATAAACAAGGTACAAAATGTGGATGTCAAAATCGAGAAAACTGATCGTCCCACAAGTGTCAAGGTGGAAAAGATAGCCAAGGAGGAAAAGCCTGTTTCTGTGGTGAAGAAAATGTCCTCCAGCTCTGCCACTCCTCCGAAGCTAAAGACTATGATCAAGTCTAACGATGCAGTGCGTGACAAAATAAGGGAACTTCTCCGAGAGGCCTTATCTAAGGTCCCTGGAGAGGCCGATGAAGATATGATGGATGAAGTTAATGCATGCGACCCTATTCGCGTTGCTGTGACCGTGGAATCTGTATTATTTGAGAAGTGGGGTCCATCAAATGGGGCCCAAAAGGTCAAGTATAGGTCTTTAATGTTTAACCTTAAGGATCCAAATAACCTAGATTTCCGGAGAAAAGTGCTACTTGGTATTGTTGAGCCACAGCGGCTGATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAACGGAAGAAGGAGATTGAGAAAATCCAAGAGAAAGCTTTGTTTGATTGTGAGCGTGGACTTCAACCAAAGGCCACCACTGATCAATTTAAGTGTGGTCGATGTGGTCAAAGGAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATAAGTCGCGTACCCTCTTTCCTCACCTTGACACGCTCTCTTCCCCCTTACTGTTATTCTCTCTTGCATCGCTTTATTTCCAGTTTTTCGTGAGAGAAACCTTGGCAACAAGACAATTAGAGTTTGAGGAGGCCATGAGAGGAGGAAGGAAGAATTTGAAGAGGGCAACAGAGGACAAGCATATAACCCTTCAAGATGGGCAAAGCATCATGCAGGTTGTGTCTCTTCGAGGCTCGAATCTCATTGAGGTCATGGATGCACGAGGTGAGAAATCACTAGCTCTATTTCCCGCTAAATTTCAGAAAAGCATGTGGATAAAACGAGGGAGCTTCGTTGTAGTTGATGAAAGTGGAAAGGAAAAGGCTCTTGAATCAGGTAGCAAGGTTGCATGTCTCGTTTCTCAAGTTCTTTTCTACGAGCAAGTTCGAGCACTACAGAAATCTCCAGAATGGCCTGAAAATTTTAAATCTGGGATTATAGATGATTCAGATGAAAGAACCACCTCCCAGCAAGAGAATGAGATGGACGCGAGTGATGATGATGGACTACCCCCATTGGAAGCCAATACAAACAGGATGAGACCCTTTGAATTGCAAGCTGATGAAGATTCAGAACCCAGTTCAGATGCAGATGATTGA 1749 0.4454 MISGVICDTRWLGWISSLPFTAAAAGDNRAPFWWRKCSTDGQHEESRCLDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQKIRAFAIDLIEIWKGIIIKETSKNKSGGTDNKVESANGERAGKMQKSPSVKVEKGETVKVEKMDRNGTSKSSSENINKVQNVDVKIEKTDRPTSVKVEKIAKEEKPVSVVKKMSSSSATPPKLKTMIKSNDAVRDKIRELLREALSKVPGEADEDMMDEVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNLDFRRKVLLGIVEPQRLINMSTAEMASEQRKKEIEKIQEKALFDCERGLQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYKSRTLFPHLDTLSSPLLLFSLASLYFQFFVRETLATRQLEFEEAMRGGRKNLKRATEDKHITLQDGQSIMQVVSLRGSNLIEVMDARGEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKALESGSKVACLVSQVLFYEQVRALQKSPEWPENFKSGIIDDSDERTTSQQENEMDASDDDGLPPLEANTNRMRPFELQADEDSEPSSDADD* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02239 582 Coils Coil 306 326 - -
Rops10g02239 582 Pfam Transcription factor S-II (TFIIS) 344 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Rops10g02239 582 NCBIfam transcription elongation factor S-II 43 371 IPR006289 GO:0003676|GO:0005634|GO:0006368
Rops10g02239 582 MobiDBLite consensus disorder prediction 107 137 - -
Rops10g02239 582 ProSiteProfiles TFIIS N-terminal domain profile. 28 103 IPR017923 -
Rops10g02239 582 SUPERFAMILY Elongation factor TFIIS domain 2 201 314 IPR036575 GO:0006351
Rops10g02239 582 ProSiteProfiles S1 domain IF1 type profile. 423 499 IPR006196 GO:0003723|GO:0003743|GO:0006413
Rops10g02239 582 Gene3D - 313 374 - -
Rops10g02239 582 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 35 114 IPR035441 -
Rops10g02239 582 MobiDBLite consensus disorder prediction 527 543 - -
Rops10g02239 582 MobiDBLite consensus disorder prediction 523 582 - -
Rops10g02239 582 SUPERFAMILY Nucleic acid-binding proteins 416 551 IPR012340 -
Rops10g02239 582 SUPERFAMILY Zinc beta-ribbon 323 371 - -
Rops10g02239 582 CDD Zn-ribbon_TFIIS 337 371 - -
Rops10g02239 582 Coils Coil 206 226 - -
Rops10g02239 582 Pfam Translation initiation factor 1A / IF-1 437 488 IPR006196 GO:0003723|GO:0003743|GO:0006413
Rops10g02239 582 ProSiteProfiles TFIIS central domain profile. 216 339 IPR003618 GO:0006351
Rops10g02239 582 CDD TFIIS_I 40 100 - -
Rops10g02239 582 Gene3D - 413 553 IPR012340 -
Rops10g02239 582 SMART TFS2_5 30 102 IPR003617 GO:0005634
Rops10g02239 582 SMART Cys4_2 344 373 IPR001222 GO:0003676|GO:0006351|GO:0008270
Rops10g02239 582 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 43 114 IPR035441 -
Rops10g02239 582 SMART eIF1neu4 433 522 IPR001253 GO:0003743|GO:0006413
Rops10g02239 582 SMART mid_6 214 322 IPR003618 GO:0006351
Rops10g02239 582 Pfam Transcription factor S-II (TFIIS), central domain 213 330 IPR003618 GO:0006351
Rops10g02239 582 Gene3D - 194 312 IPR036575 GO:0006351
Rops10g02239 582 PANTHER TRANSLATION INITIATION FACTOR-RELATED 416 579 IPR039294 -
Rops10g02239 582 Pfam TFIIS helical bundle-like domain 51 100 IPR017923 -
Rops10g02239 582 ProSiteProfiles Zinc finger TFIIS-type profile. 342 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02239 Rops-Chr10 39937402 39945388 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Rops10g02239 TFIIS_M 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02239 K03145 - gmx:100811982 535.413