Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02234 ATGAAGTTTCAGTTCTCTATTGTTGCTCTTGTTCTATTAAGCTCCACACTGTCTCTCTTTGGCTTGATCGTTGCTGACTTGAACTCTGACCGACAAGCTCTCTTAGAGTTTGCTTCTACTGTTCAACATGCCCCAAGGCTAAACTGGAATGACTCAGCTTCAATTTGTACTTCATGGGTTGGTGTGACTTGCAACTCAAATGGAACTCGTGTCATAGGCCTCCATCTTCCAGGAATTGGATTGATAGGGTCCATTCCAGAGAACAGTATAGGAAAACTTGATGCTCTTAGGGTACTGAGCCTTCATTCCAATGGCCTTAGAGGAAATCTTCCTTCTAACATCCTCTCCATTCCTTCACTCCAATTTGCACACCTGCAGCACAATAACTTCTCAGGTCTAATTCCTTCCTCTGTCTCCCCTAAACTCATTGCATTGGATATTTCCTTTAACACCTTCTCTGGCAGTATTCCCCCCACATTTCAGAACCTAAGAAGACTCACCTGGTTGTATCTCCAAAATAATTCCATATCTGGAGCTATCCCTGACTTCAGCCTTCCAAGTCTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAGTTCCAAATTCCATTAAGACATTCCCTTATACTTCTTTTGTTGGGAACTCTCACTTATGTGGACCACCTCTCAATCATTGCTCTACAATCTCTCCTCCTCCATCTCCTTCCCCAGTTTACCAACCACTCTCTCCTGCAACCACCCAAAACCAAAAAGCTACCACCCATAAAAAAAACTTTGGCTTAGCTACTATACTTGCTCTTGTCATTGGGGGTTTTGCCTTCCTCTCTCTACTAGTTTTAGTGATCTCCATATGCTGTTTGAAGAAGAAAAACAGTAAAAGCAGTGGCATACTGAAAGGAAAGGCATCTTGTGCTGGAAAGACTGAGGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAGCAGCTGAAAAGAACAAGTTATTTTTCTTTGAAGGTTCCTCTTCTAGCTTTGATCTTGAGGATTTACTAAAGGCTTCAGCAGAAGTTCTTGGAAAAGGGAGCTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTCGGAAAGAAGGAGTTTGAGCAGCAATTGGAGATTGTGGGAAGAATCGGACGCCACCCCAATGTCATGGCCCTCAGAGCTTATTACTATTCCAAGGATGAGAAACTTCTAGTTTTCAACTACATGCCAGGAGGCAGCTTGTTTTTCTTGTTGCATGGAAACAGGAATTCAGGAAGAACTCCATTAGATTGGGATTCAAGAGTTAAGATTGCACTTGGAGCTGCCAAGGGAATTGCTTTCATTCACTCTGAGGGGGGTCCAAAATTTACACATGGCAACATCAAGTCAACCAACGTGCTCATAACCCAAGAACTTGATAGCTGCATCACTGATGTTGGATTGCCTCCTCTGATGAATACCCCAGCAACCATGTCTAGATCAAATGGCTATAGAGCTCCAGAAGTTACTGATTCCAGGAGAATCACTCAGAAGTCTGATGTTTACAGCTTTGGTGTGTTGCTTCTTGAAATTTTGACAGGCAAGACCCCATTGAAATATCCTGGCTTTGATGATGTGGTTGATCTTCCAAGGTGGGTGAAATCTGTTGTTAGAGAGGAATGGACAGCTGAAGTCTTTGATGAGGAGCTTCTTAGAGGCCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGTATGTGTAACTAAAGGGCCAGATATGAGGCCTAGAATGAATGAAGTTGTTAGAATGGTAGAGGAAATCAAGAACCCTGAGTTGAAGAACAGGCCATCCTCTGAGTCTGACTCTAATGTGCAGACACCATAA 1911 0.4286 MKFQFSIVALVLLSSTLSLFGLIVADLNSDRQALLEFASTVQHAPRLNWNDSASICTSWVGVTCNSNGTRVIGLHLPGIGLIGSIPENSIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFAHLQHNNFSGLIPSSVSPKLIALDISFNTFSGSIPPTFQNLRRLTWLYLQNNSISGAIPDFSLPSLKYLNLSYNNLNGSVPNSIKTFPYTSFVGNSHLCGPPLNHCSTISPPPSPSPVYQPLSPATTQNQKATTHKKNFGLATILALVIGGFAFLSLLVLVISICCLKKKNSKSSGILKGKASCAGKTEVSKSFGSGVQAAEKNKLFFFEGSSSSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLEIVGRIGRHPNVMALRAYYYSKDEKLLVFNYMPGGSLFFLLHGNRNSGRTPLDWDSRVKIALGAAKGIAFIHSEGGPKFTHGNIKSTNVLITQELDSCITDVGLPPLMNTPATMSRSNGYRAPEVTDSRRITQKSDVYSFGVLLLEILTGKTPLKYPGFDDVVDLPRWVKSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALVCVTKGPDMRPRMNEVVRMVEEIKNPELKNRPSSESDSNVQTP* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02234 636 PANTHER OS05G0588300 PROTEIN 10 628 - -
Rops10g02234 636 ProSitePatterns Protein kinases ATP-binding region signature. 351 382 IPR017441 GO:0005524
Rops10g02234 636 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Rops10g02234 636 Gene3D Transferase(Phosphotransferase) domain 1 421 634 - -
Rops10g02234 636 Pfam Protein kinase domain 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02234 636 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02234 636 MobiDBLite consensus disorder prediction 617 636 - -
Rops10g02234 636 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515
Rops10g02234 636 FunFam pollen receptor-like kinase 1 313 420 - -
Rops10g02234 636 Gene3D Phosphorylase Kinase; domain 1 310 420 - -
Rops10g02234 636 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 627 - -
Rops10g02234 636 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Rops10g02234 636 CDD STKc_IRAK 351 616 - -
Rops10g02234 636 Pfam Leucine rich repeat 124 176 IPR001611 GO:0005515
Rops10g02234 636 SUPERFAMILY L domain-like 31 225 - -
Rops10g02234 636 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Rops10g02234 636 FunFam Nuclear pore complex protein NUP107 27 182 - -
Rops10g02234 636 SUPERFAMILY Protein kinase-like (PK-like) 349 614 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02234 Rops-Chr10 39865844 39869745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02234 7 634 Receptor kinase-like Gene Family AT5G58300 59.434 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops10g02234 Pkinase 1.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02234 - - aprc:113868460 1077.77