Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02231 ATGGGAAGGAGACCCGCAAGGTGTTATCGGCAGATCAAAAACAAGCCATACCCCAAATCACGCTTCTGTCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAAAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGTCAAAATTTGCTGGAAAGGATGCATTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGCATGAGAGGTGCATTTGGAAAGCCACAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTACTTTCTGTCCGCTGCAAGGACAACAACAGCCATCATGCACAGGAAGCCCTCCGTCGTGCAAAGTTTAAGTTCCCTGGTCGTCAGAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTACTGATTATCTGAAGCTCAGATCAGAGAAAAGGATTATGCCAGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCAAATCGTCAACCTGGAAGAGCTTTTCTGCCTCCAAGTGCTACTACTGCATAG 672 0.4524 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKLRSEKRIMPDGVNAKLLGCHGPLANRQPGRAFLPPSATTA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02231 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 FunFam 60S ribosomal protein L10 1 206 - -
Rops10g02231 223 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops10g02231 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02231 Rops-Chr10 39856461 39858572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02231 1 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 88.288 6.69e-146 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02231 K02866 - gmx:100815571 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01358 9 22281748 22283983 Rops10g02231 10 39856461 39858572 PCT