Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02230 ATGGAAACAACATCATCTTCTTCTGGAGATGACACTGTAAATTGGTTCAGGATGAGTTCATCTTCACCTTTCCGTTCTTCACTTTCTTTTGTGATGGATTATTTGTCTCGTGATGATTCTGATTCTGCTGAGCCAGTGATTATGATTCCTCGAACTCGCCCTCGGGTTAGGGTTCAATCTGATACTGATTCTGATTCTGGTGGTAGTGGCGAGTGTGGCGGTGGTTCTAGGGAAGTTTCTATTAGTATTGTTGGGAGTGGAGAGCAAGAGGGAAGTTCATCGTTGCGGAATGGGGTTGGGGAATTGGGTTGTGATGGGATGGTGAGTGATGAAGGTGGAACGATGTCGTTTGAGGAGGTTCGGCGTCGAATTTCGGAGGAGAGGGTTCCTCTGGTGACTTTGGCTGATGGTTTGAGTGGTGGCAGTAGGGATCATAGGAATGATGTTCAGCAGGTTGCAAAGTGGATTGAGCAGATTCTACCTTTCTCTCTCTTGTTATTGCTTGTTTTCATTCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTACATCAGCTGTAATGTTCAAGTCAAATGAAATTGTTAGGAAGCAAACAGCTCTAAAGGGAGATCGGAAAGTCTTTGTTCTTCTTGGTATCTCTTTTGCCTTCATGCTGTATGTGATATGCATTTACTGGTGGTGTCGAAATGATGATCTTTTATACCCACTGGCCATGTTCCCGCCAAAAGCAACACCACCTTTCTGGCATGCAATATTCGTCACTTTGGTTAATGATGTATTGGTGCGGCAAGCAGAAATGGCTTTTAAGTGTTTGTTGCTTATTTACTACAAAAATGGCAGAGGCCATAACGTCCGTCAGCAGGGTCAAATGTTAACTCTGGTTGAGTACACTCTGTTGTTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTACGGAAGTCTCTTTTCATCGCTGACCACAGGATTGTATCTAACTTTCAAGCTAACATCTGTAGTTGAGAAGGTCCAATGCTTCGTTTGTGCCTTAAAAGCAATGTCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAGTGGAACAGGTAAATGCTGCTGGTGACCTGTGCGCTATATGTCAGGAGAAGATGCATGCTCCTATCTTCTTGTGCTGTAAACACATGTTCTGCGAGGATTGTGTATCTGAATGGTTTGAGAGAGAACGAACTTGCCCATTATGCAGGGCATTGGTAAAATCTGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGCCTGCTTTTTCAGTTGTTTTAA 1317 0.4343 METTSSSSGDDTVNWFRMSSSSPFRSSLSFVMDYLSRDDSDSAEPVIMIPRTRPRVRVQSDTDSDSGGSGECGGGSREVSISIVGSGEQEGSSSLRNGVGELGCDGMVSDEGGTMSFEEVRRRISEERVPLVTLADGLSGGSRDHRNDVQQVAKWIEQILPFSLLLLLVFIRQHLQGFFVTICTSAVMFKSNEIVRKQTALKGDRKVFVLLGISFAFMLYVICIYWWCRNDDLLYPLAMFPPKATPPFWHAIFVTLVNDVLVRQAEMAFKCLLLIYYKNGRGHNVRQQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVCALKAMSKKEVHYGVYATVEQVNAAGDLCAICQEKMHAPIFLCCKHMFCEDCVSEWFERERTCPLCRALVKSADLRTFGDGSTSLLFQLF* 439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02230 438 Pfam Zinc finger, C3HC4 type (RING finger) 375 420 - -
Rops10g02230 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 425 IPR013083 -
Rops10g02230 438 ProSitePatterns Zinc finger RING-type signature. 392 401 IPR017907 -
Rops10g02230 438 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 53 438 IPR044235 GO:0061630|GO:1904294
Rops10g02230 438 MobiDBLite consensus disorder prediction 52 78 - -
Rops10g02230 438 SMART ring_2 377 414 IPR001841 -
Rops10g02230 438 CDD RING-HC_RNFT1-like 375 415 - -
Rops10g02230 438 SUPERFAMILY RING/U-box 375 424 - -
Rops10g02230 438 ProSiteProfiles Zinc finger RING-type profile. 377 415 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops10g02230 Rops-Chr10 39830618 39838954 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02230 51 438 C3H Transcription Factor Family AT5G01960 64.781 0.0 516
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02230 - K22379 gmx:100784614 624.394