Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02228 ATGGAAGCTCTGTTGTGCACAAAATTGGGTGATCCCACGGTGCCCATGGAAGAGAATAGCAGCCCAATATTTGTTTCAAAGAATCACCCAATTCCACCACTGGATTCTCCCACTGCGGTGAGAGTGAGGATCAAAGCTACAAGCTTGAATTTTGCAAATTACTTGCAGATATTGGGCAAGTACCAAGAGAAACCGCCTCTCCCTTTCATACCCGGATCCGATTTTTCGGGCCTCGTTGATGCTGTTGGTCCTAAAGTTTCAAACTTTCGAGTTGGGGACCCTGTTTGTTCCTTTGCAGCTCTTGGCTCTTTTGCTCAGTTCCTCGTCGTTGATGAGACCCAATTGTTTCGCGTGCCAGAAGGTTGTGATATGGTCGCTGCTGGAGCACTTCCTGTGGCATTTGGTACTTCTCATGTTGCACTTGTCCATAGAGCTCAGTTGACCTCTGGTCAGGTATTGCTGGTTTTGGGTGCAGCAGGAGGTGTGGGCCTTGCAGCTGTGCAAATTGGAAAAGCATGTGGTGCTATTGTCATTGCTGTTGCTAGGGGAACTGAAAAGGTGCAGCTCTTGAAATCGCTTTGTGTTGATCATGTGGTGGACTTGAGTAATGAAAATATTACTCAGAGTGTCAAAGAGTTCCTTCAGGCCAGAAGGCTTAAAGGGGTTGATGTCCTGTATGACCCAGTTGGGGGCAAGCTTACTAAGGAATCTTTGCGGCTTCTGAAATGGGGAGCTAACATTTTGATAATTGGGTTTGCTAGTGGAGAAATACCTGTCATTCCTGCTAACATAGCTCTCGTTAAGAATTGGACAATACATGGCCTTTATTGGGGTAGCTATAAAATACACCGCCCAGGTGTTCTTGAAGATTCTCTCAAGGAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCTGTCCACATTTCTCATTCTTACCGCCTTTCAGAGGCCAACCTCGCCTTTTCTGCCATCAAAGATAGGAAAGTTATTGGGAAGGTGATGATAGTTTTTGATGAGAAATTTACAAGATCTAAGCTGTGA 1041 0.4563 MEALLCTKLGDPTVPMEENSSPIFVSKNHPIPPLDSPTAVRVRIKATSLNFANYLQILGKYQEKPPLPFIPGSDFSGLVDAVGPKVSNFRVGDPVCSFAALGSFAQFLVVDETQLFRVPEGCDMVAAGALPVAFGTSHVALVHRAQLTSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGTEKVQLLKSLCVDHVVDLSNENITQSVKEFLQARRLKGVDVLYDPVGGKLTKESLRLLKWGANILIIGFASGEIPVIPANIALVKNWTIHGLYWGSYKIHRPGVLEDSLKELLSWLARGLISVHISHSYRLSEANLAFSAIKDRKVIGKVMIVFDEKFTRSKL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02228 346 SMART PKS_ER_names_mod 17 335 IPR020843 GO:0016491
Rops10g02228 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
Rops10g02228 346 Gene3D - 133 280 - -
Rops10g02228 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Rops10g02228 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Rops10g02228 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 285 IPR036291 -
Rops10g02228 346 SUPERFAMILY GroES-like 34 148 IPR011032 -
Rops10g02228 346 CDD QOR1 1 335 - -
Rops10g02228 346 Gene3D - 32 331 - -
Rops10g02228 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02228 Rops-Chr10 39795055 39799463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02228 68 266 Monolignol Biosynthesis Gene Families AT1G72680 25.106 1.38e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02228 K00344 - gmx:100817700 612.068