Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02218 ATGGAGACTCTGAAAGGTGCGATTCCAGAAGGGTTGAAGCGAGTGATCGGGGAGAGCAACGTCGATGATCTTCAAAGCACATGTAGTTCTCTTCACCGCTTCTTTCTTCATTTCGAGCCATTTCACCAGGTGGTGACTGAATTGGCAGACCCAAAGTATGCTCTGTGTGGAAAGAGTAAGGACGCTGCTTTGAAATCGAAGCAGCTTGGGAATCACTGCTTCTCCAAAGCTGATTATATCAAGGCTTTGGATTGCTATACTCAGGCATTGCGCAAGGCTCCTTTGGAGGCTGGTGACATGGAAAATAATCTGGTTGCAACATTGTATGTTAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTAATAGAATGTTTGCGAGACTGCAATCGAGCTCTTCATTTAAGTCCAAGATATGCAAAGGCATGGTATAGGAGAGGTAAGGTGAATGTTTCACTGGGAAATTATAAAGATGCAATACGTGACCTAAATGTGGCTAAGAGTGTAGAATCATCAATGGATGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTGTTTTAGACCAATGCAAGAGCACAAGTACAGTAGCACAGCCACAACCAAAGGAGAACAGCTTGAATACAGTGGGTGAGATGCCCCAAACAAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTGTCGTCAGGTGATATTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCTTATGCTATGATAATATTAAAGCAATGCCGAGAAACTCATTGCCATTATTGCTTGAATGACTTACCTGCTGATAAAGTTCCCTGTACATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGGGCAGGCGGGCAAATGTTCAGGATTTACCCAGAAGATAATGGCATTCTTAAAAACTTACCTAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAATACGATGATTATGAACAAGAGATTGAGGATATCACTGAACATAAACATGAATGTCAGGGTGTACATTGGCCTGCAGTACTGCCATCTGAGATAGTTTTGGCTGGTCGTATACTAGCAAGGTTTTTGTCAAAGAGCACATCTGAAGATGTTATAAACTTTGTGGAAAAGCTGGAGCTTTCTCATTGTTATAAACATCTGCCATCTGAAAGCAAATTGGATTCACATATATACGCCATTGTATTATTATATTGTCTTCAACACTCTTATGGAACTACGTTTTCCATAGATGAAGTATCTATATCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGCTTAAAATCAATAGACACTCATGGAGTATCAGATCAGTCTGGAAAATTTTCATTTCAATCCAGTGTACCTTTAACTAGTAATGTGGAACAGGTCAGAGTCGGCAAAGCTATCTATAAAGCTGGCAGTTTATTCAACCATTCATGCCAACCCAATGTTCATGCATATTTTCTTTCACGCACTCTTTTTTTACGAACCACAAAAGTTGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGACGTAATTTTCTCAAAGATGAATATGTGTTTCGTTGTCAGTGTACTGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCGTTTCATTGTGTCAATTCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGCACTTGACTGTGAAAAACAGAAAATAAAAAACTTCCCTATTGCTGACAAAGTTGACAAAAATGATGACATTTATGAAGTATGTCTTCTTGCATTCAACCAAAATGATGCCCCTATTCATATTCAACCTGGATCCTGTTTGAAATGTGGTTCCTACCGTGACTTGGAGTCTTCAAGTGCAGCAGTTGATGATGCCTTAACATGCATAAAAAGGTTGCAGGATGCAATACTGTCAAAAGAAGTTTCAAATACTTCTATTTCAGATGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATACATACAACAAGCTTATTGCAGAGGCAGAAGACATCCTTGCCCAGGCTCTGTGTTTAGTGGGAAAATTACAATTATCTTTGGATCATTGTACAGCATCTATCCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTGCTTCCATCCAACTTTCCTTGGATGATGGTACTGCTGTGGACAGCATAAGTCGAATAGGTGATATCTTCTCACATTATTATGGACTTCATGCAGACTTGATCTTTCCCTATCTTCAATACCTTAGGAGAGATACTGAGAATTTTTCGGTGAAGGCTCTCCAATCAAATGTTTTTTTCCAGCAAAGCGAGCTATAA 2394 0.3956 METLKGAIPEGLKRVIGESNVDDLQSTCSSLHRFFLHFEPFHQVVTELADPKYALCGKSKDAALKSKQLGNHCFSKADYIKALDCYTQALRKAPLEAGDMENNLVATLYVNRATVLHKMSLLIECLRDCNRALHLSPRYAKAWYRRGKVNVSLGNYKDAIRDLNVAKSVESSMDGKRQIESELKIVLDQCKSTSTVAQPQPKENSLNTVGEMPQTKLQCVSMPDKGRGMVSSGDISPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADKVPCTSCSIPLYCSHQCQIRAGGQMFRIYPEDNGILKNLPSDLGEYAAEVIQYDDYEQEIEDITEHKHECQGVHWPAVLPSEIVLAGRILARFLSKSTSEDVINFVEKLELSHCYKHLPSESKLDSHIYAIVLLYCLQHSYGTTFSIDEVSISQVVIIISQIKVNCMTVVRLKSIDTHGVSDQSGKFSFQSSVPLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLFLRTTKVVAAGCQLELSYGPQVGLWDCKDRRNFLKDEYVFRCQCTGCSEVNLSDIVLNAFHCVNSNCSGAVLESRALDCEKQKIKNFPIADKVDKNDDIYEVCLLAFNQNDAPIHIQPGSCLKCGSYRDLESSSAAVDDALTCIKRLQDAILSKEVSNTSISDALRSLHLLRSNLHTYNKLIAEAEDILAQALCLVGKLQLSLDHCTASIQILEKLYDPDDIVIAYELVKLASIQLSLDDGTAVDSISRIGDIFSHYYGLHADLIFPYLQYLRRDTENFSVKALQSNVFFQQSEL* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02218 797 Gene3D SET domain 415 520 IPR046341 -
Rops10g02218 797 Gene3D Tetratricopeptide repeat domain 38 197 IPR011990 GO:0005515
Rops10g02218 797 ProSiteProfiles SET domain profile. 215 521 IPR001214 GO:0005515
Rops10g02218 797 SMART tpr_5 140 173 IPR019734 GO:0005515
Rops10g02218 797 SMART tpr_5 106 139 IPR019734 GO:0005515
Rops10g02218 797 SMART tpr_5 63 96 IPR019734 GO:0005515
Rops10g02218 797 SMART tpr_5 685 718 IPR019734 GO:0005515
Rops10g02218 797 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 780 - -
Rops10g02218 797 Gene3D Tetratricopeptide repeat domain 526 776 IPR011990 GO:0005515
Rops10g02218 797 SUPERFAMILY TPR-like 63 717 IPR011990 GO:0005515
Rops10g02218 797 Pfam SET domain 226 521 IPR001214 GO:0005515
Rops10g02218 797 SUPERFAMILY SET domain 216 546 IPR046341 -
Rops10g02218 797 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops10g02218 SET 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02218 K24634 - gmx:100783548 1273.84