Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02217 ATGGCTCCCCCAAGAAGACCCCAAAAGGTTGAGCAAATGGTAGATACTACAGAAGAAGATGACCGTGATGAGCCGAAGAAAAATGTCATTAGAGCTTTGCCATTCTTTAAATTATTGAGCTATGCTGACTTAGTGGATTGGATTTTGATGGGTTTGGGAACTATAGGTTCTATTGTGCATGGCATGGCACTTCCTGTTGGGTATCTGTTGTTGGGAAAAGCTCTTAATGCTTATGGGAACAATATTAACGACCAAGATGCCATGGTTGATGCTCTTAAAAAGGTTGTTCCATTTGTGTGGTACATGGCCATCGCCACGTTTCCTGCGGGGGTACTTGAGATTGGATGTTGGATGTATACAAGTGAAAGACAGTTATCGCGTCTAAGATTAGCTTATCTAAGAGCAGTCCTCAGCCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATGGTTATTGCTGCCATATGTTGTTGGGAAGTGGCACTTCTGTGTTTAGTGGTTGTCCCACTTATTCTTATAATTGGAGCAACTTACACCAAGAAAATGAACACCATATCAACCACCAAATTGCTTTACCATTCTGAAGCGACATCTATGATAGAGCAGACAATATCAAATATAAAAACAGTATATGCTTTTGTTGGAGAAAGCTCTGCAATCAAATCCTTCACAGATAACATGGATAAACAGTATGTCATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATTATATGGGTTGGAGCTGTTGTGGTCAAAGCTGGGAGGGCAAAGGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTTTTTGGTGCTATATCTATCACTTACGCAGCACCAGATATGCAAACATTCAACCAGGCAAAAGCTGCAGGATATGAGGTTTTCCAAGTGATCCAAAGAAAGCCACTAATAAATAATGAATCAAAAGTGAAGAGGCCTAGGAAAATTAAAGGTCACATTGAACTACGAGATGTTTACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTGCAGGGATTGTCCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGCGGCTGTGGAAAGAGCACTGTTACTTCCCTGGTTACCAGATTTTACGACCCCTCCAGAGGAGAAATTTTTATTGATCGTCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGGAGAAATATAGGGACTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTAAAACTGGGGAAAATGGATGCAGATGATGAAGAGATACAGAAGGCAGCAGAGATGTCAAATGCACACTCTTTCATATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGGGTCCAATTATCAGGAGGTCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATTCGGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTAATCTTGATTGCACACAGGCTCTCAACGGTTGTAAATGCAGATACCATTGCTGTAGTGGAGAATGGACAAGTTGTACAGACAGGAACACACCAGAGTTTGTTAGAGAGAAGCCAATTCTATAGTACGTTAGTCAGCATGCAGAATCTTGAACCAGTACCAGAAAACAGAACTACAATTTCCAAAAATAGAAGTGCCCGCCAAAAAGATATTACTGAAGAAGCTAGAGCACCACCAGAGACGCAGAGAGAGGTCCAAAGAAATCTCAAAGAGCCTACTGTACTAAAGGAACAGAACAAGATGAGCACAAGAGAAGGAAATATATTTTTCAGAATTTGGTTTAATTTAAAAAAGAGGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGATTCTTCATCATCACCATTGGAGTAGCATACTTTGAAGAAGATGCAAAAACGAAAGTTGGAATTTTTTCAGCCATCTTCTCTGCAATAGGATTGCTTTCATTATTTAGCCACACCTTCCAGCATTATTTCTTTGGAGTAGTTGGAGAAAAGGCTATGGCAAATCTCAGACTTGCTCTGTATTCAGGTGTGCTTCGTAATGAAGTAGGCTGGTATGACAAACCTGAGAACACTGTTGGTTCATTAACATCACGCATTATCAGTGATACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCAGTGATTGTGCAATGCATTTCCTCCATACTGATAGCAACAGTTGTCAGCATGGCTGTCAACTGGAGAATGGGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAATCTGCCAAAGGATTTTCAGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTAGCATCTGAGTCCACAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAACAGGTACTGAAGAAAGCCAAAACATCTCTTGAAATTCCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATATGGTATCATTCAAGGTTTCTCCCTTTGCTTATGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCACCTTTAAAAATGGAATAAGATCATACCAAATATTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCTCTGCTATCAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATCGAACCAGATACACTTGATGATTCCCAACCTGAGAGGATCCAAGGAAATGTTGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTTGACAATTTTAGTTTACAAATTGAAGGTGGAACAAAGGTGGCTTTTGTAGGACCAAGTGGTGCTGGAAAATCATCTGTTTTGGCCCTTATACTAAGATTTTACGATCCAGGGGCGGGAAAGGTATTAATTGATGGGAAAGACATACGGGAATATAATCTAAGATGGTTAAGGACACAGATAGGGCTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATCAGAGACAATATTTGCTATGGAAATAATGGGGCTTCTGAAAGTGAGACAGTCGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGGACCTTACTAAAGAAACCTGCAATATTACTCCTTGATGAAGCAACAAGTGCTCTTGATGCAGAGTCTGAAAGAACTATAGTAAATGCTTTAAAAGCAATGAATCTGAAGGAAGACAGTGGTTTGTGTTCAAGAACCACCCAGATCACAGTAGCTCATAGACTTTCCACAGTGACAAACTCAGATACCATAATTGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCCTAATAGCAGCAGATGCGGGACTTTATTCAAGGTTATTCAGGTTACAGAGCTTTGGAGAAACCTCATAG 3777 0.4122 MAPPRRPQKVEQMVDTTEEDDRDEPKKNVIRALPFFKLLSYADLVDWILMGLGTIGSIVHGMALPVGYLLLGKALNAYGNNINDQDAMVDALKKVVPFVWYMAIATFPAGVLEIGCWMYTSERQLSRLRLAYLRAVLSQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGMVIAAICCWEVALLCLVVVPLILIIGATYTKKMNTISTTKLLYHSEATSMIEQTISNIKTVYAFVGESSAIKSFTDNMDKQYVISKGEALVKGVGTGMFQTVSFCSWALIIWVGAVVVKAGRAKGGDIIAAVMSILFGAISITYAAPDMQTFNQAKAAGYEVFQVIQRKPLINNESKVKRPRKIKGHIELRDVYFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVTSLVTRFYDPSRGEIFIDRHNIKDLDLKFLRRNIGTVSQEPSLFAGTIKDNLKLGKMDADDEEIQKAAEMSNAHSFISQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADTIAVVENGQVVQTGTHQSLLERSQFYSTLVSMQNLEPVPENRTTISKNRSARQKDITEEARAPPETQREVQRNLKEPTVLKEQNKMSTREGNIFFRIWFNLKKRELVKIAIGSFAAAFSGISKPFFGFFIITIGVAYFEEDAKTKVGIFSAIFSAIGLLSLFSHTFQHYFFGVVGEKAMANLRLALYSGVLRNEVGWYDKPENTVGSLTSRIISDTAMVKIIIADRMSVIVQCISSILIATVVSMAVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESTTNIRTIASFCHEEQVLKKAKTSLEIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFKNGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDTLDDSQPERIQGNVEFENVKFNYPSRPAVTVLDNFSLQIEGGTKVAFVGPSGAGKSSVLALILRFYDPGAGKVLIDGKDIREYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGASESETVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNALKAMNLKEDSGLCSRTTQITVAHRLSTVTNSDTIIVMDKGKIVEMGSHSTLIAADAGLYSRLFRLQSFGETS* 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02217 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1252 IPR027417 -
Rops10g02217 1258 SMART AAA_5 1033 1227 IPR003593 GO:0016887
Rops10g02217 1258 SMART AAA_5 400 586 IPR003593 GO:0016887
Rops10g02217 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 610 IPR027417 -
Rops10g02217 1258 FunFam ABC transporter B family member 4 363 618 - -
Rops10g02217 1258 Gene3D - 996 1256 IPR027417 -
Rops10g02217 1258 MobiDBLite consensus disorder prediction 1 23 - -
Rops10g02217 1258 MobiDBLite consensus disorder prediction 621 652 - -
Rops10g02217 1258 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Rops10g02217 1258 Pfam ABC transporter transmembrane region 688 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops10g02217 1258 Pfam ABC transporter transmembrane region 51 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops10g02217 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 989 - -
Rops10g02217 1258 CDD ABC_MTABC3_MDL1_MDL2 1006 1252 - -
Rops10g02217 1258 SUPERFAMILY ABC transporter transmembrane region 37 355 IPR036640 GO:0005524|GO:0016020
Rops10g02217 1258 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Rops10g02217 1258 PANTHER ABC TRANSPORTER B FAMILY 12 698 IPR039421 -
Rops10g02217 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
Rops10g02217 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1250 IPR003439 GO:0005524
Rops10g02217 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops10g02217 1258 FunFam ABC transporter B family member 1 996 1253 - -
Rops10g02217 1258 CDD ABC_MTABC3_MDL1_MDL2 373 610 - -
Rops10g02217 1258 SUPERFAMILY ABC transporter transmembrane region 676 991 IPR036640 GO:0005524|GO:0016020
Rops10g02217 1258 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
Rops10g02217 1258 Gene3D ABC transporter type 1, transmembrane domain 37 967 IPR036640 GO:0005524|GO:0016020
Rops10g02217 1258 Pfam ABC transporter 391 540 IPR003439 GO:0005524
Rops10g02217 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops10g02217 1258 Gene3D - 363 611 IPR027417 -
Rops10g02217 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 347 - -
Rops10g02217 1258 MobiDBLite consensus disorder prediction 624 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02217 Rops-Chr10 39711343 39718240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02217 2 1257 Calmodulin-binding Proteins AT2G36910 41.318 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02217 K05658 - zju:107414909 1843.94