Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02201 ATGGGTTCCCTTGATTGTTTTCCATCACGTGGTGATGAGGTGGCGGTGTTGTCTCTGGATTCGCTGCCTCTAGGGTTCCGATTCCGGCCTACGGATGAAGAACTCATAGATTACTACCTGAGACAGAAGATCAATGGAAATGGTGACGAGGTTTGGGTTATTAGAGAAATTGATGTTTGCAAGTGGGAACCATGGGACATGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGTAAGTATCCAAATGGGCATAGATTGAACCGAGCAACGAGTCATGGGTATTGGAAGGCAACAGGGAAGGATCGGAAAATCAAATCTGGGACCAGTTTGATTGGAATGAAGAAGACTTTAGTCTTCTATACTGGTCGTGCACCTAAAGGGAAGAGAACTCATTGGGTTATGCATGAGTACAGACCCACCCTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTGTTTAAGAAACACGATGAGAGCCTTGAAGTCTCAAACTGTGATGAAGTGGAGCAGACTGATTCAACTCCTACGGCTGCCAATTACTCGCCAGAAGAAATACAATCTGACCAAGCTCTTGTTGCAATATCCCCATCACAGGTTACAGAAGATGATAAGCGATTGGAAGTTGTCCCTGAGAACTCTGAGGAAACAATATCCTACATTACAACCCCGGTTGATTGCCTTAGTGACGGATATGCTGCTTATGATGCCCAAAATCAAATTGTAAAACCAGCTGCAGAGGAGGATCAGCCATTGAGCTTTGAGATATATTATGATCCAAAAAACAATCTATTCGATGACAGATTATTCTCCCCAGCACTTATGCATATTCCACCTGAATTTCATTATCAAACACACAATGAATCAAATGGTCAATGTGGGCTTCAATATGCTTCAAATGAGACAAATATTTCAGACTTTTTTGATCCAGTTACTTGGGATCAACTCTCCTATGACGAGTCCATTAGTCAACAGCACAACTTCCCCTTGTTTAATGTTAAGGACAATGGATCAGGCAGTGAGTCAGATGTGGAAGTAGCCAATATGACTTGTATGCAAGCTGTTTATCCACAGGAAGCAATTGACAGAAAGATTCCGTTGATGACAACATCAGAATTTTGCAGCACCATTGGCATCACCTATGATGGAAGTGGTGATGAGCAGAAGAGAAATGTTGGGTTATTCCAAAACAATTCCCAGATGGCTTTTGCATCCGATGTTAGTATGGGCCAAGTGTACAATGTAGTCAATGATTATGAGCAACCAAGAAATTATAATACAGTTGCCAGTGGTGATACTGGAATCATAAGAAGGACTCGGCAGGTGCGAAATGAACAACTGAACACAAATTTGATACAAGGTACTGCACAAAGGAGAGTTCGTTTGGTATTACATGGCTCAAATGGGATGGTGAAAGATGGGAGTCGTGGACAAGAAGAGCATAATTCAAATCCAGTCATTGCAGTGGAGAAGGAAGCTTCAGAAAATCATGCTGCTGATGAGAGTGCTACACTTACCAATCATGTGAATGAACTGCAGAAGACACCTAAGTCAACCAACAGTAGAAAGACTTGTCAGCAAGTTGCAGAAACAGGTTCCACCTTGGGGTCAAAAGACTTATCAAAGATTTCCGCCGTTCGCATCATGTGGTCTTCTGTTTTTGTAGTGTCTACCTTTGTACTGGTCTTATTAGTAGTCTTTACTAAGATATGGGGATATCTTAAATTTTGA 1779 0.4233 MGSLDCFPSRGDEVAVLSLDSLPLGFRFRPTDEELIDYYLRQKINGNGDEVWVIREIDVCKWEPWDMPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGTSLIGMKKTLVFYTGRAPKGKRTHWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEVSNCDEVEQTDSTPTAANYSPEEIQSDQALVAISPSQVTEDDKRLEVVPENSEETISYITTPVDCLSDGYAAYDAQNQIVKPAAEEDQPLSFEIYYDPKNNLFDDRLFSPALMHIPPEFHYQTHNESNGQCGLQYASNETNISDFFDPVTWDQLSYDESISQQHNFPLFNVKDNGSGSESDVEVANMTCMQAVYPQEAIDRKIPLMTTSEFCSTIGITYDGSGDEQKRNVGLFQNNSQMAFASDVSMGQVYNVVNDYEQPRNYNTVASGDTGIIRRTRQVRNEQLNTNLIQGTAQRRVRLVLHGSNGMVKDGSRGQEEHNSNPVIAVEKEASENHAADESATLTNHVNELQKTPKSTNSRKTCQQVAETGSTLGSKDLSKISAVRIMWSSVFVVSTFVLVLLVVFTKIWGYLKF* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02201 592 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Rops10g02201 592 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Rops10g02201 592 FunFam Nac domain-containing protein 86 31 175 - -
Rops10g02201 592 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Rops10g02201 592 SUPERFAMILY NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Rops10g02201 592 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02201 Rops-Chr10 39539389 39542873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02201 14 214 NAC Transcription Factor Family AT4G35580 66.667 8.91e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g02201 NAM 1.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02201 - - gmx:100777071 837.795