Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02186 ATGATGCAACGGGGGATCGATTCGGTTGAAAAAATCATGGAGGAGGTGGTGACGAGTGGAGAGAAGTTAGTGGAGAAGAAGAGGGAGGAAGAAGAGGAAGAGAGTGGAACTGAGAGCAGAGGTGAATTGAAGGGGTTGATGAAGTGGGAGAAGTTCTTGCCAAGGATGATTTTGAGGGTGCTTTTGGTTGAAGCTGATGACTCCACTAGGCAGATTATTGCAGCGCTTCTCAGAAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGCTTGAAGGCATGGGAATTACTCAAGGGAAGACCGGGCAGTATCGATCTAATACTAACAGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCCTCACAAGATTCAATTAGCACAGTATACAAATGCATGCTGAGAGGTGCTGTCGACTATCTTGTTAAGCCCATAAGAAGAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCATCAATCTCTGGTGCAAATGGCCCCCAAGATGAGAGTGTCGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGCTGCTAGTAATCGTTCAAGTGGTGAGGCTGCTTGCATCCAGAGAAATAAGGAATTAATCGAGAAAGGAAGTGATGCGCAGAGCTCTTGTACAAAGCCTGACTTGGAAGTTGAGAGTGGTCCTGTCAATAACAGTCTGGAATTTTCTCCGCTAAAATGTAGTGAAGCATATCCAACTGGAACAAAGACACAAGAAATTGAAACATGCATTCGTTTAGGCCAGACATTGATCAGGCATGACAGTCACGCTGGAGTGTTAAATGTGGCTATATGTAAAAATGGCGAGACAAGCACAACTAATGGCAAGGATGGTAATCCAGAGCATCTTCGAAGTGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAGCTCTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACACATCCAAACTGCAGTCTCAGAAATTCCACAGTTAATTGCACAGGGAAGTTTGACTTTTCTCCACCGTTGGATCTTTCCCTTAGAAGATCTCATCCCAGCAACTTTGAGAATGAGCTCACTGAAGAAAGGCACACCCTTTTGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAAGCAACTACAAGCCTCGCCTGCAGTGTTAATTAACTTCTCCGATCAACAAAGAGAACAGAAAACAAATTGTGAGAAAAGTATCCCCCAAATCGCCACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATTCCGTCTCCAGCTACAGCCCAATCAAGAGAATCCGATCATGCAACTTCACATTCCCAGCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAAGGTGTAAGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTCCTGTGTTTGGCACACAGTCAGGTCCACCAACAATGCCAAGTCCAAATTCAGTTGTGTTCCTTGAACCAAACTTTCAAGTAAATGCATTTTATCAGACAAATATTAAAGAAAATAGTTCAGAGCAGCATTATGAACCTCGTGGTCCTAATGGAAACACCACCCCAAACCACATTGTGTACACACATGAACACAAGTCGGAACATGCAGAGGATAGAGGACACATCTCTCCTGTAACTGATCAAAGTGTATCCAGTAGTTTCTGCAATGGAAATGCAAGGCATCTTAACAGCTTTGGTTATGGAAGCAATTGTGGGAGTAACAGCAATGTTGATCAAGTTGCCATTGTCAGGGCCGCTTCAGAGTGTAAGAATGAAGACCTCACAAATACTGGACATTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGACCCAGAGTAAAAGGACAATTTGTTCGTCAAGTGCATCCTGATTGTCATGCTGCAGAGAACGATGGCAATCATTAG 2088 0.4339 MMQRGIDSVEKIMEEVVTSGEKLVEKKREEEEEESGTESRGELKGLMKWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPGSIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAVDYLVKPIRRNELRNLWQHVWRRQSSISGANGPQDESVAQQKVEATAENNAASNRSSGEAACIQRNKELIEKGSDAQSSCTKPDLEVESGPVNNSLEFSPLKCSEAYPTGTKTQEIETCIRLGQTLIRHDSHAGVLNVAICKNGETSTTNGKDGNPEHLRSASISGEAHDNHYVQISSSKEAIDLIGAFHTHPNCSLRNSTVNCTGKFDFSPPLDLSLRRSHPSNFENELTEERHTLLHSNASAFKRYTNKQLQASPAVLINFSDQQREQKTNCEKSIPQIATGCNSDSSTPSMQRCIPSPATAQSRESDHATSHSQQQGHSLPIPVKGVRFNDLCTAYGSVLPPVFGTQSGPPTMPSPNSVVFLEPNFQVNAFYQTNIKENSSEQHYEPRGPNGNTTPNHIVYTHEHKSEHAEDRGHISPVTDQSVSSSFCNGNARHLNSFGYGSNCGSNSNVDQVAIVRAASECKNEDLTNTGHSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDCHAAENDGNH* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02186 695 ProSiteProfiles CCT domain profile. 639 681 IPR010402 GO:0005515
Rops10g02186 695 SMART REC_2 58 173 IPR001789 GO:0000160
Rops10g02186 695 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Rops10g02186 695 MobiDBLite consensus disorder prediction 439 479 - -
Rops10g02186 695 MobiDBLite consensus disorder prediction 539 558 - -
Rops10g02186 695 MobiDBLite consensus disorder prediction 183 215 - -
Rops10g02186 695 Gene3D - 56 243 - -
Rops10g02186 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 222 IPR045279 GO:0009736
Rops10g02186 695 MobiDBLite consensus disorder prediction 439 481 - -
Rops10g02186 695 SUPERFAMILY CheY-like 58 184 IPR011006 -
Rops10g02186 695 Pfam CCT motif 639 681 IPR010402 GO:0005515
Rops10g02186 695 CDD psREC_PRR 60 163 - -
Rops10g02186 695 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02186 Rops-Chr10 39341931 39346597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02186 333 683 Response Regulator Gene Family AT5G24470 31.421 2.75e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Rops10g02186 Response_reg 2.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02186 K12130 - gmx:100777119 1088.17