Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02182 ATGGTGCCAGCAATCGCTCTGCTCGCAAATCCTTGGTATCCTTGTCCTTCTATGGCATTTCGCACATACCTATTAAACCCCACACACACACTTCAATTCTCCATTCATCCACTTTCAACCTCAGTTGTCAAATCACACCCATTGAACAAGGAGTGTTTCCGTGCATTCTTCCAGTGCCGCTGCAGTAGCTCCTTTTCCGGTAGTGACGCTGAATTCGGGACATTTATCTCTGTGTTTCAAGAAATGGGGATCGGCTTTGAGGAAACCCAAGTGCTCTTGCTCAAAAACCCTGACCTTAACTCAGTATCAGTGGATTCATTGCAAGCTCGGATTCTTTCTTTAAGGTCTCTAGGGTTCGATCATGTTGCCCTGCATCAGTTGGTTACAAAGCGTCCAACTGTGCTGTCAGCTAAGGAAATTGACCCATTGTTAAGTTTTTTGAAAGATGACTTGGGAGGACAACTTGAGCTAGCAAAGATGAAGAGTCTTTTATCTGCTGCTGAACCAAAATTCTTGGTGGGTTTCCCTCAGAAGGTTCAACTGCTTGTTGACCGAGGAGTTCCACTTGATAAAATTGTCCATGTTCTCAACAATGTGAATTTGCCAAAGGCATTGTGTTATAGGTCAGTGGATGAGATTGAGAGAGTCATAGCTTTCTTGGAACCCTTTGGTGGGATTGGTTTGATTCTGAGGCGCCCTGCGATTCTCAACTTTGATTTGGATAATCAGCTGATTCCGAGAGTTAATGTCTTGCTGAAGCTTAGTGGAGGAAATGAGGATGACACTGGTAAGGTGCTACATAAATTCCCTTTAATCTTGAATTATAGTGTAGAACATGTTGAGAGACATGTAGAGTTGCTGAAGTCTTCTGCCAATATGGATGACCAACAAATATTTAGGTTAATATCGGTATTCCCAGCAATAGTTACTGCTAGTCGAGAGAGGAAACTGCATCCTAGAATACAATTTCTCAAGGAATGTGGGTTAGATTCAGGTGATATTTTCAAGTTCTTGATTAGAGCACCCTTGTTTCTAGGTCTTTCATTCCATGAAAACATTGCTTATAAGCTTGTCTTTCTGGTCAAGATTGGGTATAAATATAGGACTAAAGACTTGGCAATGGCAATTGGGTCCACTACTAGGACAAGTTGTGAGAACATGCAAAAGGTAATTAGTCAATTTTTGAGTTATGGATTTTCATGTGAAGACATTCTCACTATGAGCAAAAAGCAGCCACAAGTATTGCAGTATAATCATACTTCCTTAGAGAAGAAGATGAAGTACTTGATAGAAGACATGAACCGTGACATCGAAGAATTGCTAATTTTTCCTGCATTCCTTGGTTACAAGTTTGATGACAGAATTAAGCACAGGTATGAGTTGAAGAATATGAGTGGGAAAAGAATATCTCTCAATAAGCTTTTAACTCTTTCAAGTGAGAGATTTACTGGCAAACGAAAAAAGAAGTCCACTGTCATAGAAAATCTGAATTAA 1494 0.4029 MVPAIALLANPWYPCPSMAFRTYLLNPTHTLQFSIHPLSTSVVKSHPLNKECFRAFFQCRCSSSFSGSDAEFGTFISVFQEMGIGFEETQVLLLKNPDLNSVSVDSLQARILSLRSLGFDHVALHQLVTKRPTVLSAKEIDPLLSFLKDDLGGQLELAKMKSLLSAAEPKFLVGFPQKVQLLVDRGVPLDKIVHVLNNVNLPKALCYRSVDEIERVIAFLEPFGGIGLILRRPAILNFDLDNQLIPRVNVLLKLSGGNEDDTGKVLHKFPLILNYSVEHVERHVELLKSSANMDDQQIFRLISVFPAIVTASRERKLHPRIQFLKECGLDSGDIFKFLIRAPLFLGLSFHENIAYKLVFLVKIGYKYRTKDLAMAIGSTTRTSCENMQKVISQFLSYGFSCEDILTMSKKQPQVLQYNHTSLEKKMKYLIEDMNRDIEELLIFPAFLGYKFDDRIKHRYELKNMSGKRISLNKLLTLSSERFTGKRKKKSTVIENLN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02182 497 Pfam mTERF 381 482 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 Pfam mTERF 77 362 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 FunFam - 55 255 - -
Rops10g02182 497 Gene3D Transcription termination factor 3, mitochondrial 289 492 IPR038538 -
Rops10g02182 497 Gene3D Transcription termination factor 3, mitochondrial 43 177 IPR038538 -
Rops10g02182 497 PANTHER CGI-12 PROTEIN-RELATED 71 200 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 90 120 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 335 366 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 226 257 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 437 467 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 405 436 IPR003690 GO:0003690|GO:0006355
Rops10g02182 497 SMART mt_12 125 154 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02182 Rops-Chr10 39309330 39311406 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops10g02182 mTERF 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02182 - - gmx:100799904 615.92