LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g02178	ATGAGTTCCGGCGAGTTGGGTTGCATCTATGCTTCTTTGATTCTCCACGATGATGGAATCCCAATCACCGCGGAGAAGATCAACACTTTGTTAAAAGCTGCTAATGTCTCCGTCGAATCCTACTGGCCCAGCCTATTCGCCAAGCTTGCCCAGAACAGGAACGTTGATGACCTCGTTTTGAACGCTGGCTCTGCCGGTGTTGCCGTCGCCGGTGCAGCTCCTGCCGCTGCGGGCGCCGGTGCCGCCGCAGCCGCAGCACCTGCCGCTGAGGAAAAGAAGGAAGAGGTAAAGGAAGAAAGTGACGACGACATGGGTTTTGGCTTGTTTGATTAG	333	0.5495	MSSGELGCIYASLILHDDGIPITAEKINTLLKAANVSVESYWPSLFAKLAQNRNVDDLVLNAGSAGVAVAGAAPAAAGAGAAAAAAPAAEEKKEEVKEESDDDMGFGLFD*	111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g02178	110	Gene3D	-	1	63	IPR038716	-
	Rops10g02178	110	Hamap	50S ribosomal protein L12 [rpl12].	6	110	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Rops10g02178	110	PRINTS	Ribosomal protein P2 signature	97	108	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Rops10g02178	110	PRINTS	Ribosomal protein P2 signature	82	96	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Rops10g02178	110	PRINTS	Ribosomal protein P2 signature	25	36	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Rops10g02178	110	FunFam	60S acidic ribosomal protein P1	1	63	-	-
	Rops10g02178	110	CDD	Ribosomal_P1	5	61	-	-
	Rops10g02178	110	MobiDBLite	consensus disorder prediction	88	104	-	-
	Rops10g02178	110	Pfam	60s Acidic ribosomal protein	22	109	-	-
	Rops10g02178	110	MobiDBLite	consensus disorder prediction	84	110	-	-
	Rops10g02178	110	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	1	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g02178	Rops-Chr10	39194290	39195887	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g02178	1	110	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	57.522	4.77e-42	132

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g02178	K02942		-	gmx:100801741	127.872