Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02176 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGGATAATGGATATTGAATTGAAAATTCCTCCTCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGAAGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGCTATGGTGGTGGAGGAGGTGGTGGTGGTGGAGGTGGTGGTAGTGGTGGGGGCCGTTTTGGCGTCTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCACGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACCAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGACACGGAGTTTAGAAATCCTTGGGCAAGAGCTTATATACGGGTGAGAAAGTATGAGAGTAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCGAAAAGAGTTAGAAGTAGATCTTTGGAGCGATCTGTGTCAAGGTCACGATCTAGATCCAGATCAGCATCACCAATTAAATCTTCCAGGCCAAGATCACGATCACGATCGCGATCACGATCTGGATCCCCACGCCAGGTGCCGTCAGGTAGTGGTTGA 798 0.4699 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSRSRSGSPRQVPSGSG* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02176 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Rops10g02176 265 FunFam serine/arginine-rich splicing factor SR34A-like 120 197 - -
Rops10g02176 265 SUPERFAMILY RNA-binding domain, RBD 6 190 IPR035979 GO:0003676
Rops10g02176 265 CDD RRM2_SF2_plant_like 120 195 - -
Rops10g02176 265 Gene3D - 2 119 IPR012677 -
Rops10g02176 265 Gene3D - 120 197 IPR012677 -
Rops10g02176 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 184 IPR000504 GO:0003723
Rops10g02176 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Rops10g02176 265 MobiDBLite consensus disorder prediction 195 265 - -
Rops10g02176 265 FunFam serine/arginine-rich splicing factor SR34A-like 2 119 - -
Rops10g02176 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Rops10g02176 265 MobiDBLite consensus disorder prediction 216 230 - -
Rops10g02176 265 MobiDBLite consensus disorder prediction 81 111 - -
Rops10g02176 265 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 257 - -
Rops10g02176 265 SMART rrm1_1 121 190 IPR000504 GO:0003723
Rops10g02176 265 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02176 Rops-Chr10 39177501 39182981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02176 6 204 Eukaryotic Initiation Factors Gene Family AT4G34110 23.188 9.29e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02176 K12890 - gmx:100800653 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02176 10 39177501 39182981 Rops10g02176 10 39177501 39182981 ECH