Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02175 ATGCTTTCTTCTAATGCAAATCACATAGGATTCGCATGTTCAAATCGTGAACTTATATATGTCCCTCCAGTTGGTCATAAAATTCATTTAGTCCTTCCCCCAACCTTCCTCCCTCCTCCACCTTCACCACCTCCCTCCTCCACCTTCACCTCCACCACCTCCACCTCCACCTTCACCACCTTCATCTCCACCTCCCCAACCTTCACCACCTCCCTCCCCCACCTTCATCTTCACCTCCCCCCACCTTCACCACCTTCAACTCCACCTTCCCCCCACCTCCCTAACCTTCACCTCCCCTCACCTTCACCTCAACCTCCCCAGGTGAAGGTGGAGAAGGGAGGTGGTAAAGGAGGGGAGTTTCTAGATACAACCCAGATTCGCGGAAATTTCTGGAAGCAGGTAAAAAAAGCTGAGAACTTTTTTGTCTCTGGACAAGTGATCATGGCGGTTGCTGAGAATGTTGGGGCCAGAATCGGTTCTTCGAGCCAGAATTTGGACAACAGTGTAGTGTCATTGGAGACCAGTGAGGTGGAGAAAACGAAACCCAGAAGCGATCAGAATCTGAACAGCAACGGTGTGTTCAATCATGAACACCAAGAAAAAGTTGTGAACACTTTGTCAGTTGCTAATGGTAATTACGGCTTCAAGGCTCAAATGGGTCAGATGCACGAAAATGGGGTCCAGAATCAGCAGTTGGTGATGAACAATGATGGGTTTGGGATCAATGGGGACAATAGGGGTGAGAGTTTCAAGCGTGACATGAGGGATTTGGAAGAACTCTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCTTCACTGACAAATAATCATGGCTACTTACCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTTCCCAATAATTATGGTAATGCTAACGGGCAAACTAACAGAAGGAGGAAGAATGGCTATAATTCTGGGAAGCGAAGGGTGAATCATAACATAGACATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCCGACATTGATCACCTGGTTACTGAAGAGCAGCTGGCAGCTCTGTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATTTTACCCATTGAGAGTGCTACCTTCAAAGACTGCCATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATCGACAAGAAGCTTACTCAAGCAGATGTGAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCTACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTTGAGTTCACACTGGCTGAGAGTGCAATCGCAGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTTTAAGGGTAAGTCCATCAAAGACACCAGTCCGATCTCGTGCTCCTCGTAACTCTTTGCACTGA 1575 0.4641 MLSSNANHIGFACSNRELIYVPPVGHKIHLVLPPTFLPPPPSPPPSSTFTSTTSTSTFTTFISTSPTFTTSLPHLHLHLPPPSPPSTPPSPHLPNLHLPSPSPQPPQVKVEKGGGKGGEFLDTTQIRGNFWKQVKKAENFFVSGQVIMAVAENVGARIGSSSQNLDNSVVSLETSEVEKTKPRSDQNLNSNGVFNHEHQEKVVNTLSVANGNYGFKAQMGQMHENGVQNQQLVMNNDGFGINGDNRGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLPGPNAGFGYTNNFMLPNNYGNANGQTNRRRKNGYNSGKRRVNHNIDMEKREEMIRRTVYVSDIDHLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALNLSGTMLGFYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVLRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPLRVSPSKTPVRSRAPRNSLH* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02175 524 MobiDBLite consensus disorder prediction 303 322 - -
Rops10g02175 524 FunFam Polyadenylate-binding protein-interacting protein 11 302 416 - -
Rops10g02175 524 MobiDBLite consensus disorder prediction 175 197 - -
Rops10g02175 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 403 IPR000504 GO:0003723
Rops10g02175 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 502 IPR000504 GO:0003723
Rops10g02175 524 SUPERFAMILY RNA-binding domain, RBD 427 518 IPR035979 GO:0003676
Rops10g02175 524 FunFam Polyadenylate-binding protein-interacting protein 10 430 508 - -
Rops10g02175 524 MobiDBLite consensus disorder prediction 72 119 - -
Rops10g02175 524 SUPERFAMILY RNA-binding domain, RBD 312 415 IPR035979 GO:0003676
Rops10g02175 524 CDD RRM2_CID8_like 432 513 IPR034825 -
Rops10g02175 524 Gene3D - 300 416 IPR012677 -
Rops10g02175 524 Gene3D - 423 520 IPR012677 -
Rops10g02175 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 512 IPR000504 GO:0003723
Rops10g02175 524 Pfam Ataxin-2 C-terminal region 261 275 IPR009818 -
Rops10g02175 524 CDD RRM1_CID8_like 337 416 IPR034823 -
Rops10g02175 524 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 259 517 - -
Rops10g02175 524 MobiDBLite consensus disorder prediction 77 106 - -
Rops10g02175 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 414 IPR000504 GO:0003723
Rops10g02175 524 SMART rrm1_1 340 410 IPR000504 GO:0003723
Rops10g02175 524 SMART rrm1_1 437 508 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02175 Rops-Chr10 39159468 39170234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02175 338 507 Eukaryotic Initiation Factors Gene Family AT1G34140 26.437 6.09e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02175 - - gmx:106794116 627.091